Wall clock time and date at job start Thu Apr 9 2020 14:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.05331 * 2 1 4 4 C 1.54269 * 110.02933 * 121.41313 * 2 1 3 5 5 C 1.54887 * 104.19472 * 142.89254 * 4 2 1 6 6 C 1.54890 * 102.74881 * 322.06181 * 5 4 2 7 7 C 1.53870 * 110.03132 * 238.58053 * 2 1 3 8 8 H 1.08996 * 110.06959 * 121.41307 * 7 2 1 9 9 N 1.46901 * 110.03532 * 0.02562 * 7 2 1 10 10 C 1.46896 * 111.00099 * 204.61081 * 9 7 2 11 11 C 1.46901 * 110.99871 * 80.65750 * 9 7 2 12 12 C 1.50699 * 109.47150 * 190.00067 * 11 9 7 13 13 H 1.07998 * 119.99783 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99920 * 179.97438 * 12 11 9 15 15 N 1.31520 * 120.00359 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99929 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47054 * 120.00240 * 16 14 12 19 19 H 1.48498 * 109.46957 * 240.00138 * 16 14 12 20 20 H 1.09003 * 109.47104 * 172.18864 * 1 2 3 21 21 H 1.09003 * 109.47375 * 292.19002 * 1 2 3 22 22 H 1.09003 * 109.46982 * 52.18851 * 1 2 3 23 23 H 1.09008 * 110.48777 * 24.21820 * 4 2 1 24 24 H 1.08993 * 110.48937 * 261.57542 * 4 2 1 25 25 H 1.08992 * 110.75849 * 203.74335 * 5 4 2 26 26 H 1.09000 * 110.75791 * 80.37134 * 5 4 2 27 27 H 1.09007 * 110.48355 * 279.25563 * 6 5 4 28 28 H 1.09001 * 110.60034 * 156.67370 * 6 5 4 29 29 H 1.08997 * 109.47110 * 303.19704 * 10 9 7 30 30 H 1.09005 * 109.47155 * 63.19948 * 10 9 7 31 31 H 1.09001 * 109.46948 * 183.19225 * 10 9 7 32 32 H 1.08996 * 109.47145 * 70.00233 * 11 9 7 33 33 H 1.09001 * 109.47250 * 310.00346 * 11 9 7 34 34 H 0.96999 * 119.99273 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3136 -1.5008 0.7193 6 6 2.8874 -1.9407 -0.7034 7 6 2.0571 -0.7536 -1.2337 8 1 2.6866 -0.0959 -1.8330 9 7 0.9329 -1.2460 -2.0409 10 6 1.3323 -2.4075 -2.8467 11 6 0.3873 -0.1787 -2.8901 12 6 -0.9035 -0.6433 -3.5137 13 1 -1.2810 -1.6324 -3.3002 14 6 -1.6030 0.1947 -4.3560 15 7 -1.1436 1.3994 -4.6155 16 14 -3.2035 -0.3810 -5.1285 17 1 -3.5001 -1.7649 -4.6794 18 1 -4.3069 0.5214 -4.7119 19 1 -3.0759 -0.3567 -6.6078 20 1 -0.3633 -1.0182 -0.1397 21 1 -0.3634 0.3881 0.9516 22 1 -0.3633 0.6300 -0.8119 23 1 1.3142 -1.4660 1.5968 24 1 2.3296 -0.0536 2.0255 25 1 3.5324 -2.3678 1.3424 26 1 4.1710 -0.8292 0.6752 27 1 2.2771 -2.8427 -0.6570 28 1 3.7625 -2.1052 -1.3322 29 1 2.1819 -2.1392 -3.4746 30 1 1.6131 -3.2283 -2.1868 31 1 0.4982 -2.7168 -3.4766 32 1 1.1037 0.0630 -3.6751 33 1 0.1997 0.7077 -2.2840 34 1 -0.3123 1.6981 -4.2147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306543042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:15 Heat of formation + Delta-G solvation = -6.844758 kcal Electronic energy + Delta-G solvation = -13322.879862 eV Core-core repulsion = 11255.233655 eV Total energy + Delta-G solvation = -2067.646207 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.90866 -34.93351 -32.51725 -30.94532 -27.64879 -26.47004 -24.93491 -23.73466 -21.30060 -20.21144 -18.20650 -16.74772 -15.84071 -15.12352 -14.15031 -13.97428 -13.63798 -13.27085 -12.71870 -12.22340 -11.83583 -11.67959 -11.38921 -11.08352 -10.89628 -10.67223 -10.64567 -10.48239 -10.24172 -10.15262 -10.07066 -9.93562 -9.69396 -8.57557 -8.30347 -7.18770 -6.32775 -4.00822 3.46171 3.50104 3.63910 4.54473 4.86890 4.93238 4.95126 5.30982 5.43277 5.70980 5.75997 5.82665 5.88577 5.97673 6.09460 6.14309 6.16197 6.24249 6.30539 6.36367 6.53966 6.57539 6.70671 6.78308 6.86338 7.12023 7.14895 7.41600 7.91564 8.08787 8.40236 8.65504 8.92203 9.69595 11.06273 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056082 B = 0.009546 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.144785 B = 2932.417053 C = 3112.499207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.057 0.943 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.123 4.123 7 C 0.079 3.921 8 H 0.031 0.969 9 N -0.522 5.522 10 C 0.033 3.967 11 C 0.176 3.824 12 C -0.583 4.583 13 H 0.057 0.943 14 C 0.012 3.988 15 N -0.917 5.917 16 Si 1.076 2.924 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.072 0.928 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.006 0.994 30 H 0.051 0.949 31 H 0.074 0.926 32 H -0.026 1.026 33 H 0.031 0.969 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -5.146 8.531 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.161 4.161 7 C -0.031 4.031 8 H 0.049 0.951 9 N -0.246 5.246 10 C -0.115 4.115 11 C 0.051 3.949 12 C -0.622 4.622 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.554 5.554 16 Si 0.905 3.095 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.215 1.215 20 H 0.091 0.909 21 H 0.046 0.954 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.092 0.908 32 H -0.008 1.008 33 H 0.049 0.951 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.782 -4.839 7.826 10.370 hybrid contribution 2.005 -0.091 0.369 2.041 sum 6.787 -4.930 8.195 11.727 Atomic orbital electron populations 1.21821 0.93560 1.03972 0.99659 1.21696 0.97555 0.97566 0.93492 0.92456 1.22408 0.96924 0.98777 0.97183 1.22441 0.97738 0.99478 0.96476 1.22600 0.98718 0.99058 0.95677 1.22284 0.91319 0.94841 0.94619 0.95110 1.62221 1.28282 1.08563 1.25548 1.22296 0.99321 0.93745 0.96150 1.20041 0.94671 0.90192 0.90025 1.22022 1.07194 1.03101 1.29878 0.92477 1.25822 1.03447 0.94221 0.95612 1.70737 1.22553 1.18259 1.43864 0.83444 0.75014 0.75019 0.76056 1.21480 1.21397 1.21544 0.90916 0.95361 0.91263 0.91544 0.92517 0.92072 0.92096 0.90416 0.92583 0.97549 0.93063 0.90753 1.00825 0.95090 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.88 37.16 0.29 -2.25 16 2 C -0.08 -1.45 3.36 -89.50 -0.30 -1.75 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.12 -1.62 6.36 -25.07 -0.16 -1.78 16 5 C -0.12 -1.60 6.91 -24.74 -0.17 -1.77 16 6 C -0.12 -1.87 5.25 -25.07 -0.13 -2.00 16 7 C 0.08 1.47 2.81 -66.60 -0.19 1.28 16 8 H 0.03 0.61 7.97 -51.93 -0.41 0.20 16 9 N -0.52 -11.40 3.06 -234.99 -0.72 -12.12 16 10 C 0.03 0.67 8.66 60.06 0.52 1.19 16 11 C 0.18 4.59 3.16 -4.98 -0.02 4.57 16 12 C -0.58 -16.56 8.41 -34.44 -0.29 -16.85 16 13 H 0.06 1.63 7.15 -52.49 -0.38 1.26 16 14 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 15 N -0.92 -28.19 13.65 55.43 0.76 -27.43 16 16 Si 1.08 25.68 29.90 -169.99 -5.08 20.60 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H 0.07 1.49 7.36 -51.93 -0.38 1.11 16 21 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 1.55 5.32 -51.93 -0.28 1.27 16 23 H 0.07 0.94 7.86 -51.92 -0.41 0.53 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.21 6.26 -51.93 -0.33 0.88 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.05 0.88 5.99 -51.93 -0.31 0.57 16 31 H 0.07 1.62 6.69 -51.93 -0.35 1.27 16 32 H -0.03 -0.73 7.99 -51.93 -0.41 -1.14 16 33 H 0.03 0.85 5.28 -51.93 -0.27 0.57 16 34 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 LS Contribution 258.27 15.07 3.89 3.89 Total: -1.00 -29.79 258.27 -7.27 -37.06 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.58 Total: -2.89 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.54 Total: -19.11 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.04 Total: -39.55 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.79 -7.27 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.215 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds