Wall clock time and date at job start Thu Apr 9 2020 14:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.05331 * 2 1 4 4 C 1.54269 * 110.02933 * 121.41313 * 2 1 3 5 5 C 1.54887 * 104.19472 * 142.89254 * 4 2 1 6 6 C 1.54890 * 102.74881 * 322.06181 * 5 4 2 7 7 C 1.53870 * 110.03132 * 238.58053 * 2 1 3 8 8 H 1.08996 * 110.06959 * 121.41307 * 7 2 1 9 9 N 1.46901 * 110.03532 * 0.02562 * 7 2 1 10 10 C 1.46896 * 111.00099 * 204.61081 * 9 7 2 11 11 C 1.46901 * 110.99871 * 80.65750 * 9 7 2 12 12 C 1.50699 * 109.47150 * 190.00067 * 11 9 7 13 13 H 1.07998 * 119.99783 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99920 * 179.97438 * 12 11 9 15 15 N 1.31520 * 120.00359 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99929 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47054 * 120.00240 * 16 14 12 19 19 H 1.48498 * 109.46957 * 240.00138 * 16 14 12 20 20 H 1.09003 * 109.47104 * 172.18864 * 1 2 3 21 21 H 1.09003 * 109.47375 * 292.19002 * 1 2 3 22 22 H 1.09003 * 109.46982 * 52.18851 * 1 2 3 23 23 H 1.09008 * 110.48777 * 24.21820 * 4 2 1 24 24 H 1.08993 * 110.48937 * 261.57542 * 4 2 1 25 25 H 1.08992 * 110.75849 * 203.74335 * 5 4 2 26 26 H 1.09000 * 110.75791 * 80.37134 * 5 4 2 27 27 H 1.09007 * 110.48355 * 279.25563 * 6 5 4 28 28 H 1.09001 * 110.60034 * 156.67370 * 6 5 4 29 29 H 1.08997 * 109.47110 * 303.19704 * 10 9 7 30 30 H 1.09005 * 109.47155 * 63.19948 * 10 9 7 31 31 H 1.09001 * 109.46948 * 183.19225 * 10 9 7 32 32 H 1.08996 * 109.47145 * 70.00233 * 11 9 7 33 33 H 1.09001 * 109.47250 * 310.00346 * 11 9 7 34 34 H 0.96999 * 119.99273 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3136 -1.5008 0.7193 6 6 2.8874 -1.9407 -0.7034 7 6 2.0571 -0.7536 -1.2337 8 1 2.6866 -0.0959 -1.8330 9 7 0.9329 -1.2460 -2.0409 10 6 1.3323 -2.4075 -2.8467 11 6 0.3873 -0.1787 -2.8901 12 6 -0.9035 -0.6433 -3.5137 13 1 -1.2810 -1.6324 -3.3002 14 6 -1.6030 0.1947 -4.3560 15 7 -1.1436 1.3994 -4.6155 16 14 -3.2035 -0.3810 -5.1285 17 1 -3.5001 -1.7649 -4.6794 18 1 -4.3069 0.5214 -4.7119 19 1 -3.0759 -0.3567 -6.6078 20 1 -0.3633 -1.0182 -0.1397 21 1 -0.3634 0.3881 0.9516 22 1 -0.3633 0.6300 -0.8119 23 1 1.3142 -1.4660 1.5968 24 1 2.3296 -0.0536 2.0255 25 1 3.5324 -2.3678 1.3424 26 1 4.1710 -0.8292 0.6752 27 1 2.2771 -2.8427 -0.6570 28 1 3.7625 -2.1052 -1.3322 29 1 2.1819 -2.1392 -3.4746 30 1 1.6131 -3.2283 -2.1868 31 1 0.4982 -2.7168 -3.4766 32 1 1.1037 0.0630 -3.6751 33 1 0.1997 0.7077 -2.2840 34 1 -0.3123 1.6981 -4.2147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:15 Heat of formation + Delta-G solvation = -24.693049 kcal Electronic energy + Delta-G solvation = -13323.653822 eV Core-core repulsion = 11255.233655 eV Total energy + Delta-G solvation = -2068.420167 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.38805 -36.64374 -34.58961 -32.35483 -29.31464 -28.19220 -26.54485 -25.51996 -23.21056 -21.39233 -19.71923 -18.89760 -17.28496 -16.68589 -15.92860 -15.60137 -15.42996 -14.68085 -14.38571 -13.91168 -13.58170 -13.28308 -13.07536 -12.89158 -12.62610 -12.25227 -12.11567 -11.92081 -11.82183 -11.71803 -11.43879 -11.34551 -11.26572 -10.70006 -10.52505 -9.01798 -8.66735 -6.36518 1.51824 1.61510 1.78418 2.55144 3.14574 3.24125 3.67698 3.71418 4.04849 4.34774 4.42251 4.46899 4.57487 4.59667 4.67190 4.71977 4.78380 4.84274 4.98282 5.03921 5.05539 5.10316 5.18349 5.24507 5.29194 5.40528 5.52858 5.72430 5.85405 6.03593 6.43803 6.46189 6.69610 7.43637 8.71314 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056082 B = 0.009546 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.144785 B = 2932.417053 C = 3112.499207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 H 0.055 0.945 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.117 4.117 7 C 0.069 3.931 8 H 0.010 0.990 9 N -0.526 5.526 10 C 0.035 3.965 11 C 0.191 3.809 12 C -0.590 4.590 13 H 0.054 0.946 14 C -0.040 4.040 15 N -0.940 5.940 16 Si 1.125 2.875 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.280 1.280 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.004 0.996 30 H 0.088 0.912 31 H 0.052 0.948 32 H -0.060 1.060 33 H 0.016 0.984 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.762 -6.644 10.024 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.040 4.040 8 H 0.029 0.971 9 N -0.249 5.249 10 C -0.113 4.113 11 C 0.064 3.936 12 C -0.628 4.628 13 H 0.072 0.928 14 C -0.237 4.237 15 N -0.578 5.578 16 Si 0.946 3.054 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.206 1.206 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.106 0.894 31 H 0.071 0.929 32 H -0.042 1.042 33 H 0.034 0.966 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.179 -6.350 9.341 12.426 hybrid contribution 1.937 0.385 -0.065 1.976 sum 7.116 -5.966 9.276 13.125 Atomic orbital electron populations 1.21663 0.95160 1.02029 0.99162 1.21748 0.96097 0.98049 0.94781 0.92644 1.22363 0.97386 0.98944 0.95814 1.22433 0.97353 1.00536 0.94806 1.22571 0.98327 0.97160 0.97395 1.22504 0.90551 0.96551 0.94420 0.97142 1.62182 1.30286 1.07653 1.24776 1.22318 0.98306 0.94089 0.96556 1.19735 0.93460 0.91097 0.89300 1.22302 1.07930 1.02843 1.29751 0.92799 1.27398 1.06605 0.93706 0.96010 1.70875 1.22421 1.19541 1.45008 0.82833 0.71197 0.75644 0.75701 1.19450 1.20467 1.20568 0.92406 0.93030 0.95462 0.91292 0.90348 0.89376 0.90997 0.90331 0.91568 0.97732 0.89393 0.92895 1.04212 0.96625 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 7.88 71.98 0.57 -4.14 16 2 C -0.09 -2.95 3.36 -10.07 -0.03 -2.98 16 3 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.11 -2.67 6.36 31.67 0.20 -2.46 16 5 C -0.11 -2.49 6.91 31.88 0.22 -2.27 16 6 C -0.12 -3.24 5.25 31.67 0.17 -3.08 16 7 C 0.07 2.53 2.81 45.64 0.13 2.66 16 8 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 9 N -0.53 -23.24 3.06 -897.37 -2.74 -25.98 16 10 C 0.04 1.41 8.66 127.69 1.11 2.52 16 11 C 0.19 10.38 3.16 85.56 0.27 10.65 16 12 C -0.59 -34.38 8.41 25.60 0.22 -34.17 16 13 H 0.05 3.12 7.15 -2.91 -0.02 3.10 16 14 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 15 N -0.94 -59.50 13.65 21.45 0.29 -59.20 16 16 Si 1.12 51.64 29.90 68.60 2.05 53.70 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H 0.06 2.36 7.36 -2.39 -0.02 2.34 16 21 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 22 H 0.03 1.25 5.32 -2.39 -0.01 1.24 16 23 H 0.07 1.70 7.86 -2.38 -0.02 1.68 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.18 6.26 -2.38 -0.01 2.17 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 2.85 5.99 -2.38 -0.01 2.84 16 31 H 0.05 2.32 6.69 -2.39 -0.02 2.30 16 32 H -0.06 -3.57 7.99 -2.39 -0.02 -3.59 16 33 H 0.02 0.91 5.28 -2.39 -0.01 0.90 16 34 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 Total: -1.00 -65.96 258.27 4.05 -61.91 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.15 Total: 4.77 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.30 Total: -35.19 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.45 Total: -85.18 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.70 kcal Total: -65.96 4.05 -61.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.214 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds