Wall clock time and date at job start Thu Apr 9 2020 14:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.06027 * 2 1 4 4 C 1.54267 * 110.03317 * 238.58653 * 2 1 3 5 5 C 1.54884 * 104.31688 * 217.03950 * 4 2 1 6 6 C 1.55239 * 102.58801 * 37.93194 * 5 4 2 7 7 C 1.53874 * 110.03679 * 121.42156 * 2 1 3 8 8 H 1.08996 * 110.03558 * 238.57047 * 7 2 1 9 9 N 1.46907 * 110.02936 * 359.94705 * 7 2 1 10 10 C 1.46895 * 111.00159 * 202.89267 * 9 7 2 11 11 C 1.46900 * 110.99714 * 78.94078 * 9 7 2 12 12 C 1.50699 * 109.46978 * 197.42932 * 11 9 7 13 13 H 1.07999 * 120.00318 * 359.97438 * 12 11 9 14 14 C 1.37881 * 120.00320 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99542 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00391 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46761 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.46992 * 119.99743 * 16 14 12 19 19 H 1.48499 * 109.46867 * 239.99905 * 16 14 12 20 20 H 1.08998 * 109.47329 * 171.99963 * 1 2 3 21 21 H 1.09002 * 109.47340 * 291.99932 * 1 2 3 22 22 H 1.09005 * 109.47376 * 51.99446 * 1 2 3 23 23 H 1.09006 * 110.48566 * 335.78470 * 4 2 1 24 24 H 1.09003 * 110.48468 * 98.29262 * 4 2 1 25 25 H 1.09003 * 110.76217 * 156.31723 * 5 4 2 26 26 H 1.09001 * 110.75779 * 279.69502 * 5 4 2 27 27 H 1.08994 * 110.47028 * 203.39808 * 6 5 4 28 28 H 1.09002 * 110.47098 * 80.77420 * 6 5 4 29 29 H 1.08997 * 109.47153 * 54.95182 * 10 9 7 30 30 H 1.08997 * 109.47283 * 174.95019 * 10 9 7 31 31 H 1.09000 * 109.47242 * 294.95466 * 10 9 7 32 32 H 1.09003 * 109.47249 * 317.42256 * 11 9 7 33 33 H 1.08994 * 109.47303 * 77.42468 * 11 9 7 34 34 H 0.96996 * 120.00264 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3150 -1.5006 -0.7226 6 6 2.8874 -1.9408 0.7033 7 6 2.0571 -0.7536 1.2336 8 1 2.6867 -0.0955 1.8324 9 7 0.9329 -1.2455 2.0412 10 6 1.3436 -1.4709 3.4334 11 6 0.3595 -2.4656 1.4575 12 6 -1.0135 -2.7004 2.0327 13 1 -1.4194 -2.0124 2.7595 14 6 -1.7511 -3.7941 1.6318 15 7 -1.2566 -4.6322 0.7471 16 14 -3.4527 -4.0856 2.3453 17 1 -3.7748 -3.0067 3.3137 18 1 -4.4555 -4.0841 1.2502 19 1 -3.4800 -5.3979 3.0398 20 1 -0.3634 -1.0176 -0.1430 21 1 -0.3634 0.3850 0.9528 22 1 -0.3634 0.6328 -0.8098 23 1 1.3141 -1.4659 -1.5967 24 1 2.3274 -0.0536 -2.0263 25 1 3.5336 -2.3665 -1.3476 26 1 4.1719 -0.8283 -0.6788 27 1 3.7636 -2.1038 1.3307 28 1 2.2771 -2.8427 0.6569 29 1 1.7823 -0.5575 3.8352 30 1 0.4736 -1.7483 4.0286 31 1 2.0797 -2.2739 3.4697 32 1 0.2855 -2.3509 0.3760 33 1 1.0010 -3.3156 1.6896 34 1 -1.7756 -5.4015 0.4648 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:17 Heat of formation + Delta-G solvation = -16.738389 kcal Electronic energy + Delta-G solvation = -13494.090681 eV Core-core repulsion = 11426.015454 eV Total energy + Delta-G solvation = -2068.075227 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48054 -36.13787 -34.42299 -31.98847 -29.62425 -28.63935 -25.90152 -25.76993 -23.19792 -21.26994 -19.56865 -18.50061 -17.13366 -16.52949 -16.14915 -15.27314 -15.07072 -14.75386 -14.29239 -14.00896 -13.36007 -13.25342 -13.01131 -12.79268 -12.68205 -12.31045 -12.18179 -11.86702 -11.83146 -11.53717 -11.40551 -11.32134 -11.11497 -10.90115 -10.49108 -8.82643 -8.15220 -6.23851 1.39518 1.40548 1.53553 2.41959 3.16548 3.41743 3.76688 3.85749 4.13280 4.45098 4.51951 4.59860 4.64232 4.73993 4.77119 4.85484 4.89344 5.03014 5.08416 5.11612 5.14370 5.26943 5.30910 5.39198 5.39272 5.55722 5.61862 5.71242 5.94550 6.18211 6.48725 6.78284 6.94276 7.45257 8.94696 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042060 B = 0.011194 C = 0.010710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.550573 B = 2500.782269 C = 2613.803119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.089 0.911 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.166 4.166 7 C 0.076 3.924 8 H 0.087 0.913 9 N -0.538 5.538 10 C 0.039 3.961 11 C 0.214 3.786 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.281 1.281 20 H 0.038 0.962 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.006 0.994 32 H 0.025 0.975 33 H -0.043 1.043 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.171 8.044 -0.988 10.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.100 4.100 3 H 0.107 0.893 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.205 4.205 7 C -0.033 4.033 8 H 0.105 0.895 9 N -0.260 5.260 10 C -0.110 4.110 11 C 0.088 3.912 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.786 3.214 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.207 1.207 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.043 0.957 33 H -0.025 1.025 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.751 8.264 -1.051 10.723 hybrid contribution -0.382 -1.428 0.323 1.513 sum 6.370 6.836 -0.728 9.372 Atomic orbital electron populations 1.21727 0.95416 1.00971 1.00414 1.21732 0.95848 0.99023 0.93411 0.89303 1.22457 0.96860 0.98802 0.97583 1.22423 0.97918 0.99870 0.94641 1.23205 0.99566 0.99537 0.98219 1.22537 0.90461 0.95418 0.94906 0.89473 1.62283 1.29036 1.32654 1.02054 1.22221 0.98760 0.99410 0.90571 1.19505 0.92346 0.84566 0.94808 1.21560 1.01687 1.08240 1.23886 0.92559 1.25822 1.02220 0.95839 0.95703 1.70088 1.39327 1.14896 1.33266 0.85457 0.79580 0.77976 0.78361 1.18912 1.20520 1.20670 0.94270 0.92879 0.93706 0.94269 0.89698 0.92094 0.89293 0.91739 0.93421 0.90361 0.93013 0.97548 0.95718 1.02544 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 7.96 71.98 0.57 -4.33 16 2 C -0.08 -2.64 3.30 -10.07 -0.03 -2.68 16 3 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.12 -3.65 6.27 31.67 0.20 -3.45 16 5 C -0.11 -3.18 6.93 32.01 0.22 -2.96 16 6 C -0.17 -5.87 6.03 31.79 0.19 -5.68 16 7 C 0.08 2.67 2.91 45.64 0.13 2.81 16 8 H 0.09 2.66 7.76 -2.39 -0.02 2.64 16 9 N -0.54 -23.13 3.15 -897.36 -2.82 -25.95 16 10 C 0.04 1.51 9.26 127.69 1.18 2.69 16 11 C 0.21 11.26 2.20 85.56 0.19 11.45 16 12 C -0.52 -29.46 8.64 25.60 0.22 -29.24 16 13 H 0.06 3.21 7.59 -2.91 -0.02 3.18 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 16 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H 0.04 1.83 4.94 -2.39 -0.01 1.81 16 21 H 0.05 2.14 7.50 -2.39 -0.02 2.13 16 22 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.04 1.42 7.71 -2.38 -0.02 1.40 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.11 5.02 -2.39 -0.01 2.10 16 29 H 0.08 2.47 7.95 -2.39 -0.02 2.45 16 30 H 0.05 2.16 7.42 -2.39 -0.02 2.14 16 31 H 0.01 0.24 8.08 -2.39 -0.02 0.22 16 32 H 0.02 1.40 5.10 -2.39 -0.01 1.39 16 33 H -0.04 -2.52 6.69 -2.39 -0.02 -2.53 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -62.81 259.17 3.88 -58.94 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.05 Total: 7.22 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.34 Total: -30.84 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.54 Total: -82.50 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -62.81 3.88 -58.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.197 kcal (2) G-P(sol) polarization free energy of solvation -62.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds