Wall clock time and date at job start Thu Apr 9 2020 14:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48500 * 109.46944 * 239.99686 * 3 2 1 5 5 H 1.48501 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47174 * 119.99685 * 3 2 1 7 7 C 1.37881 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47040 * 179.97438 * 9 7 2 11 11 O 1.21227 * 120.00041 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99776 * 180.02562 * 10 9 7 13 13 C 1.47057 * 125.40825 * 180.02562 * 12 10 9 14 14 C 1.54105 * 103.99235 * 179.97438 * 13 12 10 15 15 N 1.47394 * 103.70056 * 0.10684 * 14 13 12 16 16 C 1.33947 * 109.21036 * 359.88525 * 15 14 13 17 17 O 1.21536 * 123.04157 * 180.09266 * 16 15 14 18 18 H 0.97002 * 119.99534 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47263 * 59.99509 * 9 7 2 20 20 H 1.09001 * 109.47589 * 299.99914 * 9 7 2 21 21 H 1.09002 * 110.54831 * 298.59337 * 13 12 10 22 22 H 1.08997 * 110.54826 * 61.25812 * 13 12 10 23 23 H 1.08996 * 110.55034 * 118.66113 * 14 13 12 24 24 H 1.09001 * 110.54910 * 241.47819 * 14 13 12 25 25 H 0.97000 * 125.37712 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4222 -3.4232 0.0001 12 7 1.7810 -4.9153 0.0000 13 6 2.6269 -6.1182 0.0005 14 6 1.6181 -7.2832 0.0002 15 7 0.3070 -6.6096 -0.0030 16 6 0.4930 -5.2831 -0.0019 17 8 -0.4240 -4.4855 -0.0024 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5568 0.8903 21 1 3.2472 -6.1500 -0.8952 22 1 3.2477 -6.1489 0.8958 23 1 1.7380 -7.8929 -0.8952 24 1 1.7357 -7.8913 0.8971 25 1 -0.5539 -7.0565 -0.0044 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059846288.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:13 Heat of formation + Delta-G solvation = -50.212519 kcal Electronic energy + Delta-G solvation = -12578.767053 eV Core-core repulsion = 10172.148179 eV Total energy + Delta-G solvation = -2406.618874 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.31392 -37.98714 -36.22476 -33.32955 -32.84064 -29.38659 -28.44946 -24.55766 -22.79658 -22.34007 -18.78604 -17.49995 -16.75108 -16.22168 -15.93667 -14.79694 -14.46557 -14.17434 -14.00782 -13.46441 -13.05434 -12.37435 -12.27355 -12.08310 -11.14872 -10.76528 -10.55589 -10.12991 -9.94141 -9.29428 -9.09726 -8.95783 -8.93062 -8.34161 -5.94507 -3.97696 2.73344 2.73766 3.41978 3.44143 3.49178 3.79065 3.92631 4.34869 4.53847 4.87167 5.03933 5.32401 5.41102 5.64248 5.65343 6.09064 7.06123 7.08533 7.35748 7.51250 7.60250 8.02139 8.29405 8.66115 8.83695 9.11775 9.65769 11.16432 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.067502 B = 0.009664 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.701302 B = 2896.721475 C = 3285.534395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.073 0.927 9 C 0.022 3.978 10 C 0.543 3.457 11 O -0.509 6.509 12 N -0.589 5.589 13 C 0.076 3.924 14 C 0.094 3.906 15 N -0.740 5.740 16 C 0.694 3.306 17 O -0.533 6.533 18 H 0.262 0.738 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -15.327 0.003 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.017 4.017 10 C 0.337 3.663 11 O -0.380 6.380 12 N -0.338 5.338 13 C -0.047 4.047 14 C -0.031 4.031 15 N -0.405 5.405 16 C 0.394 3.606 17 O -0.406 6.406 18 H 0.072 0.928 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.108 0.892 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.240 -14.422 0.002 14.595 hybrid contribution 0.119 0.362 0.000 0.381 sum 2.359 -14.060 0.002 14.257 Atomic orbital electron populations 1.70016 1.05984 1.26883 1.50149 1.25012 0.94883 0.99344 0.95161 0.86493 0.79359 0.82398 0.78766 1.20142 1.21322 1.20137 1.21183 0.94007 0.89388 1.51475 0.90899 1.19352 0.93119 0.88052 1.01196 1.22601 0.91372 0.81121 0.71157 1.90550 1.18034 1.83132 1.46314 1.46847 1.07648 1.08239 1.71089 1.22495 0.94491 0.83148 1.04520 1.22428 0.82260 0.95275 1.03113 1.45326 1.09026 1.05694 1.80474 1.16014 0.83501 0.83258 0.77810 1.91119 1.42852 1.52936 1.53679 0.92835 0.92032 0.92033 0.89197 0.89176 0.89797 0.89799 0.72892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.29 55.43 0.74 -27.00 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 15 7 C -0.52 -15.83 8.92 -34.44 -0.31 -16.14 15 8 H 0.07 2.23 6.75 -52.49 -0.35 1.88 15 9 C 0.02 0.61 3.74 -29.03 -0.11 0.50 15 10 C 0.54 13.15 7.79 -10.99 -0.09 13.07 15 11 O -0.51 -13.11 15.77 5.60 0.09 -13.03 15 12 N -0.59 -11.20 3.00 -120.14 -0.36 -11.56 15 13 C 0.08 0.96 7.20 -3.16 -0.02 0.94 15 14 C 0.09 0.81 8.08 -2.98 -0.02 0.79 15 15 N -0.74 -9.01 6.39 -64.47 -0.41 -9.42 15 16 C 0.69 12.86 8.51 -88.40 -0.75 12.11 15 17 O -0.53 -12.43 15.00 5.33 0.08 -12.35 15 18 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 19 H 0.06 1.84 7.57 -51.93 -0.39 1.45 15 20 H 0.06 1.84 7.58 -51.93 -0.39 1.45 15 21 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 15 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.43 4.09 8.96 -40.82 -0.37 3.73 15 LS Contribution 225.74 15.07 3.40 3.40 Total: -1.00 -36.42 225.74 -5.22 -41.63 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -2.33 Total: -2.27 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -1.40 Total: 12.90 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.04 Total: -47.98 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.17 Total: -25.38 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -36.42 -5.22 -41.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059846288.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.580 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds