Wall clock time and date at job start Thu Apr 9 2020 14:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48500 * 109.46944 * 239.99686 * 3 2 1 5 5 H 1.48501 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47174 * 119.99685 * 3 2 1 7 7 C 1.37881 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47040 * 179.97438 * 9 7 2 11 11 O 1.21227 * 120.00041 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99776 * 180.02562 * 10 9 7 13 13 C 1.47057 * 125.40825 * 180.02562 * 12 10 9 14 14 C 1.54105 * 103.99235 * 179.97438 * 13 12 10 15 15 N 1.47394 * 103.70056 * 0.10684 * 14 13 12 16 16 C 1.33947 * 109.21036 * 359.88525 * 15 14 13 17 17 O 1.21536 * 123.04157 * 180.09266 * 16 15 14 18 18 H 0.97002 * 119.99534 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47263 * 59.99509 * 9 7 2 20 20 H 1.09001 * 109.47589 * 299.99914 * 9 7 2 21 21 H 1.09002 * 110.54831 * 298.59337 * 13 12 10 22 22 H 1.08997 * 110.54826 * 61.25812 * 13 12 10 23 23 H 1.08996 * 110.55034 * 118.66113 * 14 13 12 24 24 H 1.09001 * 110.54910 * 241.47819 * 14 13 12 25 25 H 0.97000 * 125.37712 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4222 -3.4232 0.0001 12 7 1.7810 -4.9153 0.0000 13 6 2.6269 -6.1182 0.0005 14 6 1.6181 -7.2832 0.0002 15 7 0.3070 -6.6096 -0.0030 16 6 0.4930 -5.2831 -0.0019 17 8 -0.4240 -4.4855 -0.0024 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5568 0.8903 21 1 3.2472 -6.1500 -0.8952 22 1 3.2477 -6.1489 0.8958 23 1 1.7380 -7.8929 -0.8952 24 1 1.7357 -7.8913 0.8971 25 1 -0.5539 -7.0565 -0.0044 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059846288.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:13 Heat of formation + Delta-G solvation = -79.809496 kcal Electronic energy + Delta-G solvation = -12580.050474 eV Core-core repulsion = 10172.148179 eV Total energy + Delta-G solvation = -2407.902295 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.74840 -39.79707 -37.67534 -35.14802 -34.75126 -31.24424 -29.89652 -26.44491 -24.31742 -23.77721 -20.37696 -18.97134 -18.38321 -18.04879 -17.65156 -16.64232 -16.07030 -15.66418 -15.49219 -14.90380 -14.86863 -14.26495 -13.56841 -13.26189 -13.09632 -12.81916 -12.58882 -12.16083 -11.84461 -11.17504 -10.95587 -10.82118 -10.65547 -10.01225 -8.24429 -6.38336 0.97048 1.33301 1.40683 1.44677 1.53895 2.18548 2.40340 2.83308 3.08276 3.43348 3.83303 4.09496 4.26911 4.61232 4.74014 4.89179 5.12194 5.18981 5.57003 5.65568 5.86746 6.04809 6.17481 6.75232 6.90997 7.31280 7.33696 8.87431 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.067502 B = 0.009664 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.701302 B = 2896.721475 C = 3285.534395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.551 3.449 11 O -0.529 6.529 12 N -0.592 5.592 13 C 0.064 3.936 14 C 0.104 3.896 15 N -0.713 5.713 16 C 0.684 3.316 17 O -0.594 6.594 18 H 0.268 0.732 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 -16.940 0.003 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.085 0.915 9 C -0.010 4.010 10 C 0.343 3.657 11 O -0.403 6.403 12 N -0.339 5.339 13 C -0.057 4.057 14 C -0.019 4.019 15 N -0.378 5.378 16 C 0.384 3.616 17 O -0.471 6.471 18 H 0.076 0.924 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.121 0.879 22 H 0.121 0.879 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.398 -16.159 0.003 16.513 hybrid contribution -0.271 0.712 -0.001 0.762 sum 3.127 -15.447 0.002 15.761 Atomic orbital electron populations 1.70151 1.07779 1.28281 1.50330 1.26026 0.95855 1.03489 0.94042 0.85323 0.78138 0.77164 0.79305 1.19120 1.20000 1.19109 1.21460 0.93912 0.90959 1.52492 0.91540 1.18985 0.93271 0.90148 0.98576 1.21498 0.90015 0.82589 0.71549 1.90519 1.18081 1.84205 1.47455 1.46424 1.09218 1.08405 1.69856 1.23047 0.95263 0.81386 1.05974 1.22837 0.78276 0.93656 1.07178 1.45215 1.11508 1.03242 1.77807 1.16346 0.82562 0.84978 0.77734 1.91081 1.44429 1.55214 1.56345 0.92356 0.94970 0.94969 0.87900 0.87878 0.85763 0.85768 0.71050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.27 13.29 21.45 0.28 -58.98 15 2 C 0.00 0.28 5.46 84.65 0.46 0.74 15 3 Si 0.98 46.98 29.54 68.60 2.03 49.01 15 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 7 C -0.55 -34.53 8.92 25.60 0.23 -34.31 15 8 H 0.07 4.17 6.75 -2.91 -0.02 4.15 15 9 C 0.03 1.75 3.74 29.10 0.11 1.86 15 10 C 0.55 27.42 7.79 87.66 0.68 28.10 15 11 O -0.53 -27.60 15.77 -2.87 -0.05 -27.65 15 12 N -0.59 -22.29 3.00 -771.18 -2.32 -24.61 15 13 C 0.06 1.42 7.20 86.65 0.62 2.04 15 14 C 0.10 1.27 8.08 86.58 0.70 1.97 15 15 N -0.71 -15.32 6.39 -476.64 -3.04 -18.36 15 16 C 0.68 25.22 8.51 179.57 1.53 26.75 15 17 O -0.59 -28.91 15.00 -3.83 -0.06 -28.97 15 18 H 0.27 15.91 8.31 -92.71 -0.77 15.14 15 19 H 0.03 2.07 7.57 -2.38 -0.02 2.05 15 20 H 0.03 2.07 7.58 -2.39 -0.02 2.05 15 21 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 24 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 25 H 0.44 7.14 8.96 -92.71 -0.83 6.31 15 Total: -1.00 -83.92 225.74 1.57 -82.35 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 0.39 Total: 0.05 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 4.33 Total: 27.16 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -5.07 Total: -101.95 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.10 Total: -56.62 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -83.92 1.57 -82.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059846288.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.541 kcal (2) G-P(sol) polarization free energy of solvation -83.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds