Wall clock time and date at job start Thu Apr 9 2020 14:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.52998 * 109.47291 * 120.00701 * 2 1 3 13 13 C 1.52999 * 109.47057 * 294.99520 * 12 2 1 14 14 C 1.53114 * 109.52763 * 294.87886 * 13 12 2 15 15 C 1.53038 * 109.27908 * 182.50507 * 14 13 12 16 16 N 1.46850 * 109.57771 * 59.07632 * 15 14 13 17 17 C 1.46847 * 111.20103 * 298.29749 * 16 15 14 18 18 C 1.53040 * 109.52507 * 61.73556 * 17 16 15 19 19 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 20 20 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 21 21 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 22 22 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 23 23 H 1.08994 * 109.46986 * 55.00135 * 12 2 1 24 24 H 1.09004 * 109.46916 * 175.00083 * 12 2 1 25 25 H 1.09004 * 109.51808 * 55.00787 * 13 12 2 26 26 H 1.09009 * 109.50089 * 302.37793 * 14 13 12 27 27 H 1.08994 * 109.50656 * 62.49097 * 14 13 12 28 28 H 1.09006 * 109.40524 * 299.06648 * 15 14 13 29 29 H 1.09002 * 109.45972 * 179.12388 * 15 14 13 30 30 H 1.00910 * 110.99605 * 62.38911 * 16 15 14 31 31 H 1.09005 * 109.45917 * 301.72599 * 17 16 15 32 32 H 1.08997 * 109.45389 * 181.75113 * 17 16 15 33 33 H 1.08998 * 109.50144 * 180.88262 * 18 17 16 34 34 H 1.09005 * 109.52959 * 60.78252 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 6 2.0400 -0.7214 1.2491 13 6 1.6354 0.0687 2.4953 14 6 2.3472 1.4243 2.4953 15 6 1.9875 2.1839 3.7743 16 7 2.3935 1.3960 4.9452 17 6 1.6861 0.1100 4.9912 18 6 2.0381 -0.7121 3.7493 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 0.6955 1.1524 -3.4842 23 1 1.6054 -1.7199 1.2949 24 1 3.1264 -0.7996 1.2054 25 1 0.5564 0.2238 2.4937 26 1 3.4255 1.2690 2.4565 27 1 2.0307 2.0016 1.6268 28 1 0.9109 2.3518 3.8051 29 1 2.5052 3.1431 3.7847 30 1 3.3932 1.2595 4.9602 31 1 0.6109 0.2877 5.0163 32 1 1.9849 -0.4368 5.8855 33 1 1.5007 -1.6601 3.7761 34 1 3.1113 -0.9025 3.7305 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261233029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:44 Heat of formation + Delta-G solvation = -32.680279 kcal Electronic energy + Delta-G solvation = -13038.535520 eV Core-core repulsion = 10969.769001 eV Total energy + Delta-G solvation = -2068.766519 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -38.75992 -35.10893 -32.40051 -30.60680 -29.81263 -25.62739 -25.07026 -22.67650 -22.08139 -20.13655 -18.71063 -16.27104 -15.62046 -14.62438 -14.42922 -14.17525 -13.91455 -13.21871 -12.72182 -12.51929 -11.96901 -11.82242 -11.50036 -11.03996 -10.92066 -10.85674 -10.79470 -10.47112 -10.13605 -10.03723 -9.96848 -9.44625 -9.07928 -8.67656 -8.28951 -8.09511 -5.93751 -4.00045 3.33072 3.37666 3.40276 4.46085 4.50121 5.05446 5.21260 5.36284 5.39653 5.49178 5.65674 5.72455 5.82917 6.05081 6.15030 6.22654 6.33143 6.49316 6.52192 6.60784 6.75487 6.88053 7.03436 7.10847 7.18688 7.31106 7.49831 7.50802 7.78027 8.07051 8.23159 8.52827 9.04219 9.64403 11.11780 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066719 B = 0.008004 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.569630 B = 3497.474794 C = 3597.388329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.042 3.958 3 H 0.027 0.973 4 C -0.513 4.513 5 H 0.051 0.949 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.100 4.100 13 C -0.088 4.088 14 C -0.150 4.150 15 C 0.055 3.945 16 N -0.689 5.689 17 C 0.057 3.943 18 C -0.152 4.152 19 H 0.007 0.993 20 H 0.079 0.921 21 H 0.021 0.979 22 H 0.259 0.741 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.336 0.664 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 0.043 10.968 11.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.045 0.955 4 C -0.551 4.551 5 H 0.070 0.930 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.138 4.138 13 C -0.106 4.106 14 C -0.189 4.189 15 C -0.075 4.075 16 N -0.317 5.317 17 C -0.073 4.073 18 C -0.192 4.192 19 H 0.026 0.974 20 H 0.098 0.902 21 H 0.040 0.960 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.052 0.484 11.265 11.324 hybrid contribution 0.757 -1.065 -1.757 2.190 sum 1.810 -0.582 9.508 9.696 Atomic orbital electron populations 1.21833 0.99145 0.98625 0.99801 1.18675 0.92366 0.95817 0.90736 0.95462 1.21224 1.30727 1.12249 0.90918 0.93044 1.24963 0.95177 0.95052 0.98881 1.69879 1.36708 1.23285 1.23218 0.86719 0.79168 0.79827 0.82626 1.20387 1.21318 1.20372 1.21686 0.99351 0.98158 0.94569 1.21262 1.00120 0.94638 0.94587 1.22297 1.00181 0.97372 0.99010 1.22052 1.01133 0.96175 0.88103 1.60756 1.10979 1.18132 1.41862 1.22009 0.99256 0.89285 0.96758 1.22340 1.01122 0.99435 0.96261 0.97361 0.90234 0.95990 0.93102 0.93722 0.93847 0.91289 0.92592 0.90403 0.91232 0.91265 0.84712 0.91250 0.91468 0.91946 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.73 37.16 0.32 -3.03 16 2 C 0.04 1.06 2.17 -91.77 -0.20 0.86 16 3 H 0.03 0.73 6.41 -51.93 -0.33 0.40 16 4 C -0.51 -14.38 8.56 -34.44 -0.29 -14.67 16 5 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.94 11.30 55.43 0.63 -25.32 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C -0.10 -2.09 4.10 -26.73 -0.11 -2.20 16 13 C -0.09 -1.51 2.12 -90.50 -0.19 -1.70 16 14 C -0.15 -2.45 5.07 -26.65 -0.14 -2.58 16 15 C 0.05 0.76 6.55 -3.83 -0.03 0.74 16 16 N -0.69 -8.95 6.87 -113.81 -0.78 -9.73 16 17 C 0.06 0.72 6.55 -3.83 -0.03 0.69 16 18 C -0.15 -2.18 5.37 -26.65 -0.14 -2.33 16 19 H 0.01 0.17 6.46 -51.93 -0.34 -0.17 16 20 H 0.08 2.16 6.05 -51.93 -0.31 1.85 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.26 6.35 -51.93 -0.33 0.93 16 26 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.08 1.44 6.59 -51.93 -0.34 1.09 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.34 4.00 8.86 -39.29 -0.35 3.66 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 261.73 15.07 3.94 3.94 Total: -1.00 -28.44 261.73 -7.90 -36.34 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.77 Total: 0.77 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -0.89 Total: -22.62 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.16 Total: -35.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.44 -7.90 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.656 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds