Wall clock time and date at job start Thu Apr 9 2020 14:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.52998 * 109.47291 * 120.00701 * 2 1 3 13 13 C 1.52999 * 109.47057 * 294.99520 * 12 2 1 14 14 C 1.53114 * 109.52763 * 294.87886 * 13 12 2 15 15 C 1.53038 * 109.27908 * 182.50507 * 14 13 12 16 16 N 1.46850 * 109.57771 * 59.07632 * 15 14 13 17 17 C 1.46847 * 111.20103 * 298.29749 * 16 15 14 18 18 C 1.53040 * 109.52507 * 61.73556 * 17 16 15 19 19 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 20 20 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 21 21 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 22 22 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 23 23 H 1.08994 * 109.46986 * 55.00135 * 12 2 1 24 24 H 1.09004 * 109.46916 * 175.00083 * 12 2 1 25 25 H 1.09004 * 109.51808 * 55.00787 * 13 12 2 26 26 H 1.09009 * 109.50089 * 302.37793 * 14 13 12 27 27 H 1.08994 * 109.50656 * 62.49097 * 14 13 12 28 28 H 1.09006 * 109.40524 * 299.06648 * 15 14 13 29 29 H 1.09002 * 109.45972 * 179.12388 * 15 14 13 30 30 H 1.00910 * 110.99605 * 62.38911 * 16 15 14 31 31 H 1.09005 * 109.45917 * 301.72599 * 17 16 15 32 32 H 1.08997 * 109.45389 * 181.75113 * 17 16 15 33 33 H 1.08998 * 109.50144 * 180.88262 * 18 17 16 34 34 H 1.09005 * 109.52959 * 60.78252 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 6 2.0400 -0.7214 1.2491 13 6 1.6354 0.0687 2.4953 14 6 2.3472 1.4243 2.4953 15 6 1.9875 2.1839 3.7743 16 7 2.3935 1.3960 4.9452 17 6 1.6861 0.1100 4.9912 18 6 2.0381 -0.7121 3.7493 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 0.6955 1.1524 -3.4842 23 1 1.6054 -1.7199 1.2949 24 1 3.1264 -0.7996 1.2054 25 1 0.5564 0.2238 2.4937 26 1 3.4255 1.2690 2.4565 27 1 2.0307 2.0016 1.6268 28 1 0.9109 2.3518 3.8051 29 1 2.5052 3.1431 3.7847 30 1 3.3932 1.2595 4.9602 31 1 0.6109 0.2877 5.0163 32 1 1.9849 -0.4368 5.8855 33 1 1.5007 -1.6601 3.7761 34 1 3.1113 -0.9025 3.7305 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261233029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:43 Heat of formation + Delta-G solvation = -50.317647 kcal Electronic energy + Delta-G solvation = -13039.300334 eV Core-core repulsion = 10969.769001 eV Total energy + Delta-G solvation = -2069.531333 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.03873 -36.86637 -34.21907 -31.84993 -31.45542 -27.40604 -27.03191 -23.91645 -23.47308 -21.54793 -20.40356 -18.33664 -16.90399 -16.57452 -15.72702 -15.51518 -15.19002 -14.85262 -14.36914 -14.10413 -13.53985 -13.35359 -13.06167 -12.83118 -12.58984 -12.47866 -12.19658 -12.11744 -12.02814 -11.66131 -11.50096 -11.13972 -10.83385 -10.69275 -10.38686 -9.24546 -8.08900 -6.23306 1.38944 1.40167 1.47941 2.41849 3.17486 3.45798 3.83589 3.94852 4.17883 4.27645 4.49317 4.51118 4.60730 4.72804 4.86447 4.88327 4.99771 5.04727 5.07644 5.10717 5.16983 5.24559 5.32955 5.42432 5.44734 5.60365 5.62882 6.01435 6.11616 6.18518 6.40030 6.53464 6.89915 7.44899 8.95004 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066719 B = 0.008004 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.569630 B = 3497.474794 C = 3597.388329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.039 3.961 3 H 0.002 0.998 4 C -0.537 4.537 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.918 5.918 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.272 1.272 12 C -0.090 4.090 13 C -0.083 4.083 14 C -0.145 4.145 15 C 0.063 3.937 16 N -0.686 5.686 17 C 0.061 3.939 18 C -0.145 4.145 19 H 0.030 0.970 20 H 0.050 0.950 21 H 0.020 0.980 22 H 0.260 0.740 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.345 0.655 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -0.542 12.131 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.021 3.979 3 H 0.020 0.980 4 C -0.576 4.576 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.128 4.128 13 C -0.102 4.102 14 C -0.185 4.185 15 C -0.067 4.067 16 N -0.315 5.315 17 C -0.069 4.069 18 C -0.184 4.184 19 H 0.049 0.951 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.536 -0.106 12.443 12.538 hybrid contribution 0.612 -0.873 -2.121 2.374 sum 2.148 -0.979 10.322 10.588 Atomic orbital electron populations 1.21664 0.98829 0.98316 0.99475 1.18650 0.92623 0.94643 0.91989 0.97961 1.21632 1.30990 1.12470 0.92470 0.93386 1.25750 0.95348 0.95778 1.01904 1.70017 1.37491 1.24418 1.23855 0.85714 0.78809 0.78822 0.78941 1.19716 1.20805 1.19693 1.21524 0.98727 0.98004 0.94520 1.21173 0.99552 0.95031 0.94413 1.22243 0.99918 0.96899 0.99417 1.21968 1.01167 0.96550 0.86970 1.60762 1.11726 1.18238 1.40746 1.22036 0.99248 0.88944 0.96683 1.22277 1.01389 0.99465 0.95298 0.95081 0.93108 0.96097 0.93087 0.93966 0.94389 0.92214 0.92640 0.93281 0.91512 0.89914 0.83739 0.91397 0.89057 0.91362 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.73 71.98 0.63 -5.60 16 2 C 0.04 2.01 2.17 -11.54 -0.03 1.98 16 3 H 0.00 0.13 6.41 -2.39 -0.02 0.11 16 4 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -54.30 11.30 21.45 0.24 -54.06 16 8 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 C -0.09 -3.76 4.10 30.59 0.13 -3.63 16 13 C -0.08 -2.79 2.12 -10.72 -0.02 -2.82 16 14 C -0.15 -4.68 5.07 30.65 0.16 -4.53 16 15 C 0.06 1.64 6.55 86.33 0.57 2.21 16 16 N -0.69 -15.88 6.87 -513.98 -3.53 -19.41 16 17 C 0.06 1.35 6.55 86.33 0.57 1.92 16 18 C -0.15 -3.82 5.37 30.65 0.16 -3.65 16 19 H 0.03 1.35 6.46 -2.39 -0.02 1.34 16 20 H 0.05 2.82 6.05 -2.39 -0.01 2.80 16 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 23 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.06 2.12 6.35 -2.39 -0.02 2.10 16 26 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.05 1.85 6.59 -2.39 -0.02 1.83 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.34 7.16 8.86 -89.69 -0.79 6.37 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -60.41 261.73 1.83 -58.59 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.26 Total: 11.76 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 2.83 Total: -43.37 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -3.29 Total: -73.46 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -60.41 1.83 -58.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.267 kcal (2) G-P(sol) polarization free energy of solvation -60.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds