Wall clock time and date at job start Thu Apr 9 2020 14:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46834 * 2 1 4 4 C 1.53001 * 109.47185 * 239.99628 * 2 1 3 5 5 H 1.08993 * 115.55839 * 279.26444 * 4 2 1 6 6 C 1.52997 * 117.49660 * 64.95677 * 4 2 1 7 7 C 1.52995 * 60.00151 * 107.48590 * 6 4 2 8 8 C 1.52999 * 117.49865 * 252.50631 * 7 6 4 9 9 C 1.53004 * 117.49768 * 107.48720 * 7 6 4 10 10 N 1.46501 * 109.46738 * 119.99675 * 2 1 3 11 11 C 1.46497 * 120.00116 * 60.00214 * 10 2 1 12 12 C 1.36940 * 119.99993 * 239.99964 * 10 2 1 13 13 H 1.07996 * 120.00068 * 19.92674 * 12 10 2 14 14 C 1.38809 * 120.00002 * 199.93242 * 12 10 2 15 15 N 1.31612 * 120.00203 * 17.59767 * 14 12 10 16 16 Si 1.86810 * 119.99852 * 197.60761 * 14 12 10 17 17 H 1.48503 * 109.47022 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47254 * 119.99697 * 16 14 12 19 19 H 1.48500 * 109.46693 * 239.99666 * 16 14 12 20 20 H 1.09000 * 109.47439 * 59.33058 * 1 2 3 21 21 H 1.08998 * 109.47294 * 179.32946 * 1 2 3 22 22 H 1.09004 * 109.47256 * 299.33339 * 1 2 3 23 23 H 1.09006 * 117.49675 * 214.98191 * 6 4 2 24 24 H 1.09004 * 117.50067 * 359.97138 * 6 4 2 25 25 H 1.09011 * 109.46911 * 131.97148 * 8 7 6 26 26 H 1.08994 * 109.47288 * 251.97155 * 8 7 6 27 27 H 1.09001 * 109.47037 * 11.97585 * 8 7 6 28 28 H 1.08998 * 109.47066 * 351.37847 * 9 7 6 29 29 H 1.08995 * 109.47107 * 111.37858 * 9 7 6 30 30 H 1.09000 * 109.46886 * 231.37751 * 9 7 6 31 31 H 1.09005 * 109.47468 * 92.57880 * 11 10 2 32 32 H 1.08998 * 109.47305 * 212.57751 * 11 10 2 33 33 H 1.09000 * 109.47234 * 332.58041 * 11 10 2 34 34 H 0.97003 * 120.00254 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 2.0475 -1.8098 -1.1935 6 6 1.7338 -0.0853 -2.6066 7 6 3.1575 -0.0469 -2.0475 8 6 3.6794 1.2971 -1.5356 9 6 4.2000 -0.9522 -2.7068 10 7 2.0182 -0.6906 1.1962 11 6 1.6643 -2.0931 1.4281 12 6 2.8055 -0.0250 2.0977 13 1 2.8091 1.0547 2.1176 14 6 3.5989 -0.7383 2.9857 15 7 3.8707 -2.0050 2.7541 16 14 4.2807 0.0999 4.5096 17 1 3.8328 1.5155 4.5382 18 1 3.7872 -0.6005 5.7225 19 1 5.7646 0.0511 4.4792 20 1 -0.3634 0.5242 -0.8839 21 1 -0.3634 -1.0276 -0.0120 22 1 -0.3634 0.5035 0.8959 23 1 1.5399 -0.7555 -3.4441 24 1 1.1687 0.8467 -2.6097 25 1 4.1330 1.1606 -0.5538 26 1 4.4248 1.6855 -2.2295 27 1 2.8521 2.0026 -1.4587 28 1 3.7064 -1.6217 -3.4112 29 1 4.9292 -0.3401 -3.2374 30 1 4.7070 -1.5397 -1.9414 31 1 2.4390 -2.7370 1.0118 32 1 1.5788 -2.2739 2.4996 33 1 0.7118 -2.3121 0.9455 34 1 4.4248 -2.5035 3.3749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306592200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:10 Heat of formation + Delta-G solvation = 18.510579 kcal Electronic energy + Delta-G solvation = -13323.873190 eV Core-core repulsion = 11257.326473 eV Total energy + Delta-G solvation = -2066.546717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93709 -37.03815 -33.77838 -31.06482 -29.34366 -28.44011 -27.87909 -25.58201 -23.39649 -20.73352 -19.27982 -18.78162 -17.15413 -15.96574 -15.74895 -15.09956 -14.87153 -14.47881 -14.29134 -13.66022 -13.38813 -13.27072 -13.11095 -12.84812 -12.67653 -12.59464 -12.47937 -12.26809 -12.05982 -11.96343 -11.74949 -11.22954 -10.70493 -10.60212 -10.14436 -8.73739 -7.79396 -5.20965 1.44788 1.46525 1.56630 2.52723 2.96593 3.33545 3.69615 3.88836 4.01083 4.25771 4.32041 4.53960 4.64229 4.77899 4.80244 4.83164 4.90321 4.96993 5.03663 5.07379 5.12449 5.19799 5.27915 5.34684 5.38247 5.47285 5.55072 5.66999 5.67678 5.72229 6.36973 7.19564 7.95382 8.39225 9.25230 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.011905 C = 0.010857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.090148 B = 2351.463951 C = 2578.397066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.191 3.809 3 H 0.060 0.940 4 C -0.161 4.161 5 H 0.072 0.928 6 C -0.147 4.147 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.107 4.107 10 N -0.606 5.606 11 C 0.182 3.818 12 C -0.250 4.250 13 H 0.069 0.931 14 C -0.057 4.057 15 N -0.939 5.939 16 Si 0.960 3.040 17 H -0.266 1.266 18 H -0.293 1.293 19 H -0.295 1.295 20 H 0.075 0.925 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.031 0.969 31 H -0.006 1.006 32 H 0.015 0.985 33 H 0.028 0.972 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 4.511 -9.871 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.182 4.182 5 H 0.090 0.910 6 C -0.184 4.184 7 C -0.138 4.138 8 C -0.162 4.162 9 C -0.164 4.164 10 N -0.329 5.329 11 C 0.037 3.963 12 C -0.381 4.381 13 H 0.086 0.914 14 C -0.251 4.251 15 N -0.587 5.587 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.220 1.220 19 H -0.222 1.222 20 H 0.093 0.907 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.842 4.423 -9.766 11.389 hybrid contribution 0.725 -0.215 1.202 1.420 sum -3.117 4.208 -8.564 10.038 Atomic orbital electron populations 1.22089 0.96205 1.01212 1.01147 1.20180 0.92944 0.94609 0.83775 0.92151 1.22912 1.03902 0.98065 0.93285 0.90998 1.23255 0.96657 1.02790 0.95746 1.21624 0.90773 0.98006 1.03437 1.21236 1.00836 0.94271 0.99890 1.21266 0.97754 0.98381 0.99018 1.44196 1.57289 1.09516 1.21852 1.20383 0.93982 0.84741 0.97212 1.19548 1.17247 0.90978 1.10281 0.91362 1.25628 0.99223 0.97038 1.03227 1.70275 1.41365 1.10072 1.36967 0.85294 0.77207 0.78404 0.80148 1.19051 1.21992 1.22224 0.90653 0.93522 0.93890 0.87932 0.87809 0.94859 0.91127 0.92015 0.91679 0.91018 0.95018 0.98807 0.96649 0.95323 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.04 71.98 0.65 -4.41 16 2 C 0.19 7.83 2.71 44.99 0.12 7.95 16 3 H 0.06 2.51 5.71 -2.39 -0.01 2.49 16 4 C -0.16 -5.98 4.85 -10.79 -0.05 -6.03 16 5 H 0.07 2.99 7.54 -2.39 -0.02 2.97 16 6 C -0.15 -4.06 9.11 30.59 0.28 -3.79 16 7 C -0.14 -4.55 2.70 -52.18 -0.14 -4.69 16 8 C -0.11 -3.41 8.42 71.98 0.61 -2.80 16 9 C -0.11 -3.27 9.85 71.98 0.71 -2.56 16 10 N -0.61 -31.08 2.81 -702.79 -1.98 -33.06 16 11 C 0.18 9.40 7.96 127.77 1.02 10.41 16 12 C -0.25 -14.05 9.60 84.03 0.81 -13.24 16 13 H 0.07 3.74 7.82 -2.91 -0.02 3.72 16 14 C -0.06 -3.26 4.99 84.86 0.42 -2.84 16 15 N -0.94 -57.42 10.82 21.65 0.23 -57.19 16 16 Si 0.96 46.32 29.59 68.60 2.03 48.35 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 20 H 0.07 2.07 7.65 -2.39 -0.02 2.05 16 21 H 0.05 1.60 6.69 -2.39 -0.02 1.58 16 22 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 23 H 0.10 2.45 8.05 -2.38 -0.02 2.43 16 24 H 0.10 2.54 7.86 -2.38 -0.02 2.52 16 25 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.07 1.91 7.98 -2.39 -0.02 1.90 16 27 H 0.06 1.82 7.18 -2.39 -0.02 1.81 16 28 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 29 H 0.07 1.86 7.96 -2.39 -0.02 1.84 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H -0.01 -0.36 7.55 -2.38 -0.02 -0.38 16 32 H 0.01 0.84 7.08 -2.39 -0.02 0.82 16 33 H 0.03 1.27 6.44 -2.39 -0.02 1.26 16 34 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -63.63 269.94 5.75 -57.88 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.04 Total: 6.02 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.42 Total: -22.00 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.74 Total: -90.25 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -63.63 5.75 -57.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306592200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.389 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds