Wall clock time and date at job start Thu Apr 9 2020 14:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99775 * 2 1 4 4 H 1.48496 * 109.46560 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46750 * 299.99914 * 3 2 1 6 6 H 1.48498 * 109.47040 * 60.00001 * 3 2 1 7 7 C 1.37879 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46927 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.88105 * 51.11846 * 10 9 7 12 12 C 1.55157 * 111.00544 * 174.99785 * 10 9 7 13 13 C 1.54323 * 102.93924 * 153.61655 * 12 10 9 14 14 N 1.47018 * 107.27252 * 337.80856 * 13 12 10 15 15 C 1.34784 * 125.64722 * 178.90573 * 14 13 12 16 16 N 1.34777 * 119.99964 * 0.02669 * 15 14 13 17 17 O 1.21588 * 119.99876 * 180.02562 * 15 14 13 18 18 C 1.47421 * 108.70379 * 359.16638 * 14 13 12 19 19 H 0.97006 * 120.00319 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47498 * 60.00533 * 9 7 2 21 21 H 1.09001 * 109.47349 * 299.99622 * 9 7 2 22 22 H 1.09002 * 110.71837 * 35.25368 * 12 10 9 23 23 H 1.08996 * 110.72155 * 271.97781 * 12 10 9 24 24 H 1.09003 * 109.88093 * 218.39301 * 13 12 10 25 25 H 1.09001 * 110.01124 * 97.30012 * 13 12 10 26 26 H 0.96996 * 119.99871 * 359.97438 * 16 15 14 27 27 H 0.97000 * 119.99554 * 180.02562 * 16 15 14 28 28 H 1.09006 * 110.36331 * 142.73710 * 18 14 13 29 29 H 1.08996 * 110.37004 * 265.06168 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 1 2.9842 -3.5416 0.7936 12 6 1.5100 -5.0224 0.1289 13 6 2.4844 -6.0070 -0.5512 14 7 3.3420 -5.2213 -1.4505 15 6 4.3394 -5.7123 -2.2125 16 7 4.6194 -7.0304 -2.1887 17 8 4.9866 -4.9660 -2.9215 18 6 2.9344 -3.8065 -1.3759 19 1 -0.4851 0.8401 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8920 22 1 0.5568 -4.9965 -0.3992 23 1 1.3646 -5.2855 1.1766 24 1 1.9247 -6.7459 -1.1246 25 1 3.0952 -6.5066 0.2008 26 1 4.1033 -7.6256 -1.6228 27 1 5.3375 -7.3837 -2.7368 28 1 3.8076 -3.1566 -1.4337 29 1 2.2319 -3.5714 -2.1755 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:16 Heat of formation + Delta-G solvation = -69.690940 kcal Electronic energy + Delta-G solvation = -12624.103127 eV Core-core repulsion = 10352.472700 eV Total energy + Delta-G solvation = -2271.630427 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.14707 -38.70218 -35.46571 -34.61732 -32.89415 -30.66388 -28.29463 -25.51105 -23.65563 -21.18258 -20.92684 -19.15672 -18.49349 -17.81201 -16.97840 -16.41622 -15.82915 -15.67844 -14.63846 -14.45687 -13.98704 -13.81339 -13.48731 -13.07253 -12.92760 -12.61029 -12.33550 -11.94976 -11.52035 -11.44208 -11.23394 -10.97414 -10.71904 -10.53747 -9.55115 -8.18348 -6.27006 1.39006 1.41109 1.53163 1.82075 2.12951 2.42250 3.15622 3.38377 3.79651 3.89948 4.12009 4.38368 4.55283 4.70147 4.89756 5.02194 5.04593 5.17754 5.22034 5.37676 5.53247 5.73926 5.86711 6.01150 6.04649 6.27447 6.88541 6.99415 7.41739 7.62899 8.93037 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.050694 B = 0.008494 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.198689 B = 3295.811756 C = 3724.020915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.039 3.961 10 C -0.084 4.084 11 H 0.069 0.931 12 C -0.122 4.122 13 C 0.103 3.897 14 N -0.638 5.638 15 C 0.712 3.288 16 N -0.840 5.840 17 O -0.652 6.652 18 C 0.142 3.858 19 H 0.263 0.737 20 H -0.003 1.003 21 H 0.006 0.994 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.413 0.587 27 H 0.422 0.578 28 H 0.046 0.954 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -15.289 0.643 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.002 3.998 10 C -0.104 4.104 11 H 0.088 0.912 12 C -0.160 4.160 13 C -0.019 4.019 14 N -0.376 5.376 15 C 0.412 3.588 16 N -0.410 5.410 17 O -0.535 6.535 18 C 0.018 3.982 19 H 0.072 0.928 20 H 0.015 0.985 21 H 0.025 0.975 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.245 0.755 27 H 0.255 0.745 28 H 0.065 0.935 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.451 -14.638 0.202 15.301 hybrid contribution 0.238 0.898 -0.114 0.936 sum 4.689 -13.740 0.088 14.518 Atomic orbital electron populations 1.70068 1.07439 1.27543 1.51972 1.25826 0.95672 1.02824 0.94995 0.85555 0.79046 0.79650 0.77770 1.19227 1.20665 1.20131 1.21680 0.93248 0.92522 1.49940 0.92873 1.18908 0.93590 0.91715 0.95595 1.22230 0.97674 0.95670 0.94808 0.91228 1.22706 0.98016 0.92904 1.02358 1.22236 0.92475 0.94279 0.92892 1.47754 1.34462 1.09808 1.45560 1.15761 0.79670 0.83618 0.79793 1.42656 1.41441 1.05287 1.51579 1.90917 1.55356 1.59629 1.47613 1.21850 0.97754 0.80566 0.97999 0.92823 0.98458 0.97546 0.90913 0.88105 0.89152 0.89047 0.75530 0.74481 0.93521 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 15 2 C 0.00 0.27 5.46 84.65 0.46 0.73 15 3 Si 0.95 45.01 29.54 68.60 2.03 47.03 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 7 C -0.54 -30.18 8.86 25.60 0.23 -29.96 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.04 1.98 4.49 29.85 0.13 2.11 15 10 C -0.08 -3.27 2.94 -9.48 -0.03 -3.30 15 11 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 12 C -0.12 -3.35 6.42 31.78 0.20 -3.15 15 13 C 0.10 2.25 6.15 86.73 0.53 2.79 15 14 N -0.64 -20.30 3.33 -830.20 -2.76 -23.06 15 15 C 0.71 23.20 8.76 179.05 1.57 24.77 15 16 N -0.84 -16.18 8.83 -184.74 -1.63 -17.81 15 17 O -0.65 -28.40 17.44 -3.99 -0.07 -28.47 15 18 C 0.14 5.71 6.12 86.78 0.53 6.24 15 19 H 0.26 14.87 8.31 -92.70 -0.77 14.10 15 20 H 0.00 -0.16 7.97 -2.39 -0.02 -0.18 15 21 H 0.01 0.33 8.14 -2.39 -0.02 0.31 15 22 H 0.07 2.05 8.04 -2.39 -0.02 2.04 15 23 H 0.10 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 26 H 0.41 4.95 7.81 -92.71 -0.72 4.22 15 27 H 0.42 6.71 8.93 -92.71 -0.83 5.88 15 28 H 0.05 2.11 8.04 -2.38 -0.02 2.09 15 29 H 0.05 2.06 7.90 -2.39 -0.02 2.04 15 Total: -1.00 -73.16 248.39 1.08 -72.08 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -0.40 Total: 5.57 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 3.63 Total: 0.24 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -4.11 Total: -96.45 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.07 Total: -28.47 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.16 1.08 -72.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.390 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds