Wall clock time and date at job start Thu Apr 9 2020 14:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47000 * 180.02562 * 11 10 9 13 13 O 1.42903 * 110.01655 * 64.30102 * 12 11 10 14 14 C 1.54272 * 110.03105 * 302.91047 * 12 11 10 15 15 C 1.54959 * 104.15883 * 217.13560 * 14 12 11 16 16 C 1.54883 * 102.77851 * 37.88861 * 15 14 12 17 17 C 1.53874 * 110.03455 * 185.69448 * 12 11 10 18 18 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 20 20 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 21 21 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 22 22 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 23 23 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 24 24 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 25 25 H 0.96705 * 113.99792 * 300.70104 * 13 12 11 26 26 H 1.09000 * 110.48503 * 335.78324 * 14 12 11 27 27 H 1.08999 * 110.48331 * 98.42310 * 14 12 11 28 28 H 1.09007 * 110.71889 * 279.57346 * 15 14 12 29 29 H 1.08998 * 110.76537 * 156.22749 * 15 14 12 30 30 H 1.09007 * 110.48679 * 203.40822 * 16 15 14 31 31 H 1.09001 * 110.48733 * 80.76392 * 16 15 14 32 32 H 1.09002 * 110.02799 * 238.57024 * 17 12 11 33 33 H 1.09006 * 110.03034 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 8 3.2351 -6.1428 1.2118 14 6 3.4167 -6.0406 -1.2150 15 6 3.6312 -7.5088 -1.6616 16 6 2.2350 -8.1417 -1.4402 17 6 1.7239 -7.4855 -0.1410 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6241 -2.5568 0.8903 21 1 2.8721 -3.6042 -0.8894 22 1 2.8721 -3.6043 0.8905 23 1 0.8541 -5.0446 0.8913 24 1 0.8535 -5.0451 -0.8886 25 1 3.7401 -5.3305 1.3541 26 1 2.9456 -5.4646 -2.0115 27 1 4.3643 -5.5870 -0.9242 28 1 4.3798 -7.9964 -1.0370 29 1 3.9142 -7.5555 -2.7132 30 1 2.3210 -9.2210 -1.3141 31 1 1.5727 -7.9055 -2.2730 32 1 1.9402 -8.1285 0.7123 33 1 0.6511 -7.3052 -0.2103 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:18 Heat of formation + Delta-G solvation = -90.989362 kcal Electronic energy + Delta-G solvation = -12830.467122 eV Core-core repulsion = 10661.453469 eV Total energy + Delta-G solvation = -2169.013653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.17656 -34.76613 -33.98405 -31.96338 -28.90058 -28.47047 -25.64747 -22.91813 -21.10657 -19.90444 -19.38979 -16.51870 -15.98617 -15.45041 -15.11780 -14.43705 -14.23566 -13.35676 -12.84896 -12.37624 -12.18586 -12.03100 -11.47500 -11.10337 -11.06334 -11.00116 -10.79743 -10.68985 -10.61647 -10.47920 -10.23716 -9.70342 -9.58829 -9.19280 -8.91230 -8.33562 -5.98722 -4.01382 3.33473 3.37886 3.40221 4.43240 4.46464 4.73869 4.76898 5.07846 5.36666 5.39792 5.52290 5.57417 5.71625 5.74157 5.88741 5.95203 6.05973 6.11071 6.12399 6.23187 6.40328 6.48497 6.50821 6.77673 6.89097 7.15827 7.68532 7.84114 7.99796 8.01884 8.44006 9.05810 9.62608 11.12589 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065176 B = 0.006767 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.505223 B = 4136.701141 C = 4223.500578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.113 4.113 11 C -0.142 4.142 12 C 0.129 3.871 13 O -0.565 6.565 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.114 4.114 18 H 0.261 0.739 19 H 0.014 0.986 20 H 0.015 0.985 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.376 0.624 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -13.126 -2.246 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.151 4.151 11 C -0.179 4.179 12 C 0.088 3.912 13 O -0.372 6.372 14 C -0.185 4.185 15 C -0.160 4.160 16 C -0.161 4.161 17 C -0.151 4.151 18 H 0.070 0.930 19 H 0.033 0.967 20 H 0.033 0.967 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.225 0.775 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.560 -13.595 -2.183 14.505 hybrid contribution 0.622 1.619 -0.070 1.736 sum 5.182 -11.976 -2.253 13.242 Atomic orbital electron populations 1.69958 1.06067 1.26678 1.50863 1.25034 0.94847 0.99246 0.95365 0.86665 0.79592 0.83191 0.78595 1.20273 1.21274 1.20240 1.21241 0.92951 0.91210 1.50580 0.92824 1.19080 0.94004 0.91328 0.97128 1.21667 0.99250 0.94166 0.99978 1.22371 0.98257 0.95061 1.02244 1.21914 0.90566 0.95014 0.83683 1.86448 1.65006 1.43884 1.41882 1.23084 0.99934 0.96704 0.98778 1.22476 0.97033 0.95991 1.00546 1.22350 0.96850 0.99383 0.97516 1.22163 0.99522 0.95378 0.98063 0.92963 0.96717 0.96698 0.93164 0.93652 0.91786 0.91609 0.77505 0.90471 0.91266 0.91622 0.91890 0.91843 0.91564 0.90933 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.30 4.66 -26.73 -0.12 -2.42 16 11 C -0.14 -2.46 4.13 -26.73 -0.11 -2.57 16 12 C 0.13 1.92 1.06 -89.50 -0.10 1.83 16 13 O -0.56 -8.84 12.89 -35.23 -0.45 -9.29 16 14 C -0.15 -2.01 4.95 -25.03 -0.12 -2.13 16 15 C -0.12 -1.43 6.91 -24.70 -0.17 -1.60 16 16 C -0.12 -1.39 6.83 -25.08 -0.17 -1.57 16 17 C -0.11 -1.51 6.27 -25.61 -0.16 -1.67 16 18 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 19 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 20 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.05 0.99 6.90 -51.93 -0.36 0.64 16 22 H 0.04 0.89 6.89 -51.93 -0.36 0.53 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.38 5.18 7.54 45.56 0.34 5.52 16 26 H 0.08 1.09 7.45 -51.93 -0.39 0.71 16 27 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 33 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 LS Contribution 265.03 15.07 3.99 3.99 Total: -1.00 -30.66 265.03 -7.16 -37.82 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.91 Total: 0.67 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -1.51 Total: -23.43 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.57 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.45 Total: -9.29 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.66 -7.16 -37.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.170 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds