Wall clock time and date at job start Thu Apr 9 2020 14:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33485 * 117.59917 * 2 1 4 4 O 1.21282 * 118.68154 * 2.78644 * 3 2 1 5 5 C 1.50480 * 122.62579 * 183.06202 * 3 2 1 6 6 C 1.53461 * 108.98665 * 343.34441 * 5 3 2 7 7 C 1.53414 * 107.86480 * 46.13034 * 6 5 3 8 8 N 1.35553 * 117.59595 * 180.02562 * 2 1 3 9 9 C 1.46896 * 111.00134 * 33.14722 * 8 2 1 10 10 C 1.50700 * 109.47195 * 62.31130 * 9 8 2 11 11 H 1.08005 * 119.99555 * 4.83061 * 10 9 8 12 12 C 1.37871 * 120.00278 * 184.82856 * 10 9 8 13 13 N 1.31518 * 120.00054 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00052 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47327 * 60.00025 * 14 12 10 16 16 H 1.48502 * 109.47252 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47297 * 299.99977 * 14 12 10 18 18 H 1.08996 * 109.46635 * 354.72900 * 1 2 3 19 19 H 1.08992 * 109.46823 * 114.72815 * 1 2 3 20 20 H 1.08998 * 109.46661 * 234.73151 * 1 2 3 21 21 H 1.08997 * 109.54031 * 103.39691 * 5 3 2 22 22 H 1.08998 * 109.53929 * 223.64081 * 5 3 2 23 23 H 1.08995 * 109.95956 * 286.47088 * 6 5 3 24 24 H 1.09000 * 109.72673 * 165.65613 * 6 5 3 25 25 H 1.09008 * 109.57304 * 174.21916 * 7 6 5 26 26 H 1.08993 * 109.57586 * 53.83896 * 7 6 5 27 27 H 1.08998 * 109.47261 * 182.30740 * 9 8 2 28 28 H 1.08999 * 109.47649 * 302.31157 * 9 8 2 29 29 H 0.96996 * 120.00114 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0835 1.1830 0.0000 4 8 1.4113 2.1912 0.0517 5 6 3.5809 1.3156 -0.0677 6 6 4.2183 -0.0350 0.2851 7 6 3.4720 -1.1255 -0.4942 8 7 2.0930 -1.2013 -0.0005 9 6 1.3193 -2.1994 -0.7508 10 6 1.2033 -1.7671 -2.1898 11 1 1.7235 -0.8847 -2.5321 12 6 0.4331 -2.4980 -3.0693 13 7 -0.2007 -3.5723 -2.6524 14 14 0.2900 -1.9625 -4.8532 15 1 1.6373 -1.9545 -5.4773 16 1 -0.5896 -2.9090 -5.5851 17 1 -0.2923 -0.5978 -4.9151 18 1 -0.3632 1.0233 0.0944 19 1 -0.3633 -0.4299 -0.9334 20 1 -0.3632 -0.5934 0.8390 21 1 3.8757 1.6095 -1.0751 22 1 3.9126 2.0705 0.6452 23 1 4.1287 -0.2204 1.3554 24 1 5.2699 -0.0316 -0.0015 25 1 3.9668 -2.0851 -0.3442 26 1 3.4667 -0.8772 -1.5555 27 1 1.8250 -3.1637 -0.7009 28 1 0.3234 -2.2885 -0.3169 29 1 -0.7422 -4.0868 -3.2712 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254914.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:41 Heat of formation + Delta-G solvation = -0.701588 kcal Electronic energy + Delta-G solvation = -13332.956975 eV Core-core repulsion = 11064.318150 eV Total energy + Delta-G solvation = -2268.638824 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11032 -36.87627 -33.92244 -32.92743 -30.88672 -27.44032 -26.74451 -24.68318 -22.26517 -21.63813 -18.08734 -16.74593 -16.46853 -15.97667 -15.31065 -14.59678 -13.89019 -13.46382 -13.14706 -13.06549 -12.43029 -11.97715 -11.75563 -11.59386 -11.27402 -11.05131 -10.78190 -10.69935 -10.39911 -10.12976 -9.98815 -9.15821 -9.01377 -8.61041 -6.83846 -6.18552 -4.30965 3.19277 3.20295 3.25644 3.28999 3.58025 4.27949 4.75436 5.08838 5.15729 5.24168 5.39628 5.75423 5.99346 6.05375 6.20875 6.30287 6.31426 6.37650 6.47804 6.64617 6.79258 7.25974 7.35651 7.68649 7.72549 8.01376 8.63913 8.73094 9.17875 9.36982 10.84254 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.040180 B = 0.012369 C = 0.011950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.689728 B = 2263.103118 C = 2342.475056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.419 5.419 3 C 0.498 3.502 4 O -0.583 6.583 5 C -0.132 4.132 6 C -0.123 4.123 7 C 0.031 3.969 8 N -0.308 5.308 9 C 0.159 3.841 10 C -0.554 4.554 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.276 1.276 18 H 0.080 0.920 19 H 0.086 0.914 20 H 0.058 0.942 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 3.590 3.732 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.235 5.235 3 C 0.285 3.715 4 O -0.463 6.463 5 C -0.172 4.172 6 C -0.161 4.161 7 C -0.098 4.098 8 N -0.125 5.125 9 C 0.034 3.966 10 C -0.592 4.592 11 H 0.073 0.927 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.201 1.201 18 H 0.099 0.901 19 H 0.105 0.895 20 H 0.076 0.924 21 H 0.110 0.890 22 H 0.111 0.889 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.662 3.814 4.180 8.005 hybrid contribution -0.076 0.180 -2.064 2.073 sum 5.586 3.994 2.116 7.186 Atomic orbital electron populations 1.21933 0.78674 1.03024 1.03499 1.46748 1.06815 1.01704 1.68197 1.20082 0.90768 0.82497 0.78189 1.90629 1.66418 1.34941 1.54333 1.21723 0.92151 0.99428 1.03940 1.21832 0.99191 0.93591 1.01460 1.22516 0.89294 0.99608 0.98359 1.64160 1.01039 0.94783 1.52527 1.20432 0.94750 0.89903 0.91527 1.21501 1.30967 1.11696 0.95084 0.92662 1.24918 0.94958 0.94652 0.98877 1.69913 1.30484 1.16200 1.35724 0.86662 0.78217 0.78679 0.84604 1.20165 1.20974 1.20096 0.90098 0.89509 0.92350 0.88988 0.88889 0.90701 0.90837 0.89207 0.92613 0.93522 0.93164 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 8.95 59.85 0.54 2.02 15 2 N -0.42 -8.89 3.06 -67.48 -0.21 -9.10 15 3 C 0.50 10.22 7.47 -11.67 -0.09 10.13 15 4 O -0.58 -13.50 15.98 5.56 0.09 -13.41 15 5 C -0.13 -2.08 6.17 -27.75 -0.17 -2.25 15 6 C -0.12 -1.75 6.28 -26.28 -0.16 -1.91 15 7 C 0.03 0.54 5.39 -3.74 -0.02 0.52 15 8 N -0.31 -6.40 5.18 -115.00 -0.60 -6.99 15 9 C 0.16 3.81 4.59 -4.98 -0.02 3.79 15 10 C -0.55 -14.41 6.59 -34.44 -0.23 -14.64 15 11 H 0.06 1.48 6.79 -52.48 -0.36 1.12 15 12 C 0.07 1.87 5.46 -17.82 -0.10 1.77 15 13 N -0.89 -24.61 13.29 55.43 0.74 -23.87 15 14 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 15 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 18 H 0.08 1.65 6.60 -51.93 -0.34 1.30 15 19 H 0.09 2.00 6.07 -51.93 -0.32 1.68 15 20 H 0.06 1.12 7.93 -51.93 -0.41 0.71 15 21 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.09 1.47 8.14 -51.92 -0.42 1.05 15 26 H 0.06 1.10 6.58 -51.93 -0.34 0.76 15 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.05 1.28 6.60 -51.93 -0.34 0.93 15 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 236.97 15.07 3.57 3.57 Total: -1.00 -29.51 236.97 -5.46 -34.97 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.78 Total: -0.47 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.25 Total: -0.57 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.06 Total: -39.96 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.51 -5.46 -34.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254914.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.268 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds