Wall clock time and date at job start Thu Apr 9 2020 14:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33485 * 117.59917 * 2 1 4 4 O 1.21282 * 118.68154 * 2.78644 * 3 2 1 5 5 C 1.50480 * 122.62579 * 183.06202 * 3 2 1 6 6 C 1.53461 * 108.98665 * 343.34441 * 5 3 2 7 7 C 1.53414 * 107.86480 * 46.13034 * 6 5 3 8 8 N 1.35553 * 117.59595 * 180.02562 * 2 1 3 9 9 C 1.46896 * 111.00134 * 33.14722 * 8 2 1 10 10 C 1.50700 * 109.47195 * 62.31130 * 9 8 2 11 11 H 1.08005 * 119.99555 * 4.83061 * 10 9 8 12 12 C 1.37871 * 120.00278 * 184.82856 * 10 9 8 13 13 N 1.31518 * 120.00054 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00052 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47327 * 60.00025 * 14 12 10 16 16 H 1.48502 * 109.47252 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47297 * 299.99977 * 14 12 10 18 18 H 1.08996 * 109.46635 * 354.72900 * 1 2 3 19 19 H 1.08992 * 109.46823 * 114.72815 * 1 2 3 20 20 H 1.08998 * 109.46661 * 234.73151 * 1 2 3 21 21 H 1.08997 * 109.54031 * 103.39691 * 5 3 2 22 22 H 1.08998 * 109.53929 * 223.64081 * 5 3 2 23 23 H 1.08995 * 109.95956 * 286.47088 * 6 5 3 24 24 H 1.09000 * 109.72673 * 165.65613 * 6 5 3 25 25 H 1.09008 * 109.57304 * 174.21916 * 7 6 5 26 26 H 1.08993 * 109.57586 * 53.83896 * 7 6 5 27 27 H 1.08998 * 109.47261 * 182.30740 * 9 8 2 28 28 H 1.08999 * 109.47649 * 302.31157 * 9 8 2 29 29 H 0.96996 * 120.00114 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0835 1.1830 0.0000 4 8 1.4113 2.1912 0.0517 5 6 3.5809 1.3156 -0.0677 6 6 4.2183 -0.0350 0.2851 7 6 3.4720 -1.1255 -0.4942 8 7 2.0930 -1.2013 -0.0005 9 6 1.3193 -2.1994 -0.7508 10 6 1.2033 -1.7671 -2.1898 11 1 1.7235 -0.8847 -2.5321 12 6 0.4331 -2.4980 -3.0693 13 7 -0.2007 -3.5723 -2.6524 14 14 0.2900 -1.9625 -4.8532 15 1 1.6373 -1.9545 -5.4773 16 1 -0.5896 -2.9090 -5.5851 17 1 -0.2923 -0.5978 -4.9151 18 1 -0.3632 1.0233 0.0944 19 1 -0.3633 -0.4299 -0.9334 20 1 -0.3632 -0.5934 0.8390 21 1 3.8757 1.6095 -1.0751 22 1 3.9126 2.0705 0.6452 23 1 4.1287 -0.2204 1.3554 24 1 5.2699 -0.0316 -0.0015 25 1 3.9668 -2.0851 -0.3442 26 1 3.4667 -0.8772 -1.5555 27 1 1.8250 -3.1637 -0.7009 28 1 0.3234 -2.2885 -0.3169 29 1 -0.7422 -4.0868 -3.2712 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254914.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:40 Heat of formation + Delta-G solvation = -20.780272 kcal Electronic energy + Delta-G solvation = -13333.827652 eV Core-core repulsion = 11064.318150 eV Total energy + Delta-G solvation = -2269.509501 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.71970 -38.57452 -35.40725 -34.82215 -32.62138 -29.24132 -28.27209 -26.45826 -23.88418 -23.26355 -19.69875 -18.56504 -18.11022 -17.70071 -16.89258 -16.49045 -15.37147 -15.07437 -14.87135 -14.46564 -14.16162 -13.76133 -13.40987 -13.15736 -13.04441 -12.87318 -12.38332 -12.33387 -12.01946 -11.81182 -11.68698 -10.90536 -10.69030 -10.64916 -8.62404 -8.16679 -6.41209 1.33095 1.35386 1.42197 1.58992 1.98351 2.32071 3.03458 3.25377 3.88750 3.97486 4.11866 4.42988 4.60105 4.64914 4.72665 4.79186 4.87657 4.95659 5.00642 5.12216 5.23713 5.30244 5.52767 5.64301 5.88191 6.09516 6.70741 7.01215 7.27989 7.54474 8.78927 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.040180 B = 0.012369 C = 0.011950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.689728 B = 2263.103118 C = 2342.475056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.429 5.429 3 C 0.486 3.514 4 O -0.614 6.614 5 C -0.128 4.128 6 C -0.108 4.108 7 C 0.024 3.976 8 N -0.305 5.305 9 C 0.172 3.828 10 C -0.553 4.553 11 H 0.046 0.954 12 C 0.024 3.976 13 N -0.915 5.915 14 Si 0.948 3.052 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.280 1.280 18 H 0.082 0.918 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.104 0.896 22 H 0.119 0.881 23 H 0.083 0.917 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 4.203 3.709 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.244 5.244 3 C 0.275 3.725 4 O -0.497 6.497 5 C -0.167 4.167 6 C -0.146 4.146 7 C -0.104 4.104 8 N -0.123 5.123 9 C 0.046 3.954 10 C -0.592 4.592 11 H 0.064 0.936 12 C -0.177 4.177 13 N -0.554 5.554 14 Si 0.773 3.227 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.205 1.205 18 H 0.100 0.900 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.122 0.878 22 H 0.137 0.863 23 H 0.101 0.899 24 H 0.133 0.867 25 H 0.122 0.878 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.399 4.426 4.161 9.574 hybrid contribution -0.604 0.011 -2.018 2.107 sum 6.795 4.437 2.143 8.394 Atomic orbital electron populations 1.21792 0.79328 1.02994 1.02522 1.46911 1.06884 1.02233 1.68390 1.21086 0.92957 0.81514 0.76909 1.90608 1.67730 1.35764 1.55580 1.21824 0.88183 1.01195 1.05512 1.21817 1.00604 0.90855 1.01293 1.22718 0.87835 1.02036 0.97812 1.64109 1.01977 0.94248 1.51923 1.20129 0.94123 0.90424 0.90772 1.21639 1.30401 1.11035 0.96164 0.93617 1.25605 0.94856 0.94784 1.02444 1.70000 1.31263 1.17169 1.36927 0.85766 0.78420 0.77951 0.80522 1.19394 1.20332 1.20549 0.89952 0.92190 0.91204 0.87796 0.86265 0.89879 0.86733 0.87776 0.94593 0.94667 0.95211 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.25 8.95 127.77 1.14 4.39 15 2 N -0.43 -17.97 3.06 -486.52 -1.49 -19.46 15 3 C 0.49 19.29 7.47 87.79 0.66 19.94 15 4 O -0.61 -27.98 15.98 -3.04 -0.05 -28.03 15 5 C -0.13 -3.58 6.17 29.93 0.18 -3.39 15 6 C -0.11 -2.64 6.28 30.89 0.19 -2.45 15 7 C 0.02 0.80 5.39 86.49 0.47 1.26 15 8 N -0.31 -12.47 5.18 -517.76 -2.68 -15.15 15 9 C 0.17 8.31 4.59 85.56 0.39 8.70 15 10 C -0.55 -29.00 6.59 25.60 0.17 -28.83 15 11 H 0.05 2.45 6.79 -2.91 -0.02 2.43 15 12 C 0.02 1.30 5.46 84.65 0.46 1.76 15 13 N -0.91 -51.28 13.29 21.45 0.28 -51.00 15 14 Si 0.95 42.80 29.54 68.60 2.03 44.83 15 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 18 H 0.08 3.41 6.60 -2.39 -0.02 3.39 15 19 H 0.06 2.84 6.07 -2.39 -0.01 2.83 15 20 H 0.07 2.72 7.93 -2.39 -0.02 2.70 15 21 H 0.10 2.72 8.14 -2.39 -0.02 2.70 15 22 H 0.12 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.11 1.96 8.14 -2.39 -0.02 1.95 15 25 H 0.10 3.17 8.14 -2.38 -0.02 3.15 15 26 H 0.04 1.36 6.58 -2.39 -0.02 1.34 15 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 28 H 0.03 1.55 6.60 -2.39 -0.02 1.54 15 29 H 0.27 14.27 8.31 -92.71 -0.77 13.50 15 Total: -1.00 -62.94 236.97 2.90 -60.05 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.13 Total: 7.37 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 3.67 Total: 1.39 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -3.88 Total: -85.61 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.94 2.90 -60.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254914.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.266 kcal (2) G-P(sol) polarization free energy of solvation -62.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds