Wall clock time and date at job start Thu Apr 9 2020 14:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46932 * 2 1 4 4 H 1.09002 * 110.83876 * 54.30339 * 3 2 1 5 5 C 1.54799 * 110.94757 * 178.03830 * 3 2 1 6 6 C 1.51801 * 102.23313 * 142.17967 * 5 3 2 7 7 O 1.21282 * 126.04392 * 165.15725 * 6 5 3 8 8 N 1.34592 * 107.92473 * 345.17793 * 6 5 3 9 9 C 1.46504 * 123.53107 * 178.41786 * 8 6 5 10 10 C 1.50691 * 109.47296 * 274.97594 * 9 8 6 11 11 H 1.08005 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00261 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00063 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47344 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47519 * 120.00024 * 14 12 10 17 17 H 1.48503 * 109.47013 * 240.00301 * 14 12 10 18 18 N 1.36430 * 112.95615 * 358.39967 * 8 6 5 19 19 H 1.09006 * 109.46768 * 299.99705 * 1 2 3 20 20 H 1.08991 * 109.47554 * 60.00007 * 1 2 3 21 21 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46768 * 240.00295 * 2 1 3 23 23 H 1.08996 * 109.47186 * 120.00298 * 2 1 3 24 24 H 1.09003 * 110.85004 * 260.36935 * 5 3 2 25 25 H 1.09001 * 110.85194 * 23.79067 * 5 3 2 26 26 H 1.09006 * 109.46402 * 34.97881 * 9 8 6 27 27 H 1.09003 * 109.47139 * 154.97252 * 9 8 6 28 28 H 0.96999 * 120.00218 * 179.97438 * 13 12 10 29 29 H 1.00897 * 111.01571 * 256.76781 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 2.0062 0.8273 5 6 3.5866 1.4827 0.0495 6 6 3.9074 2.6521 -0.8637 7 8 4.9735 3.2250 -0.9420 8 7 2.7994 2.9413 -1.5711 9 6 2.7196 4.0403 -2.5366 10 6 2.3807 5.3191 -1.8153 11 1 2.2392 5.3140 -0.7446 12 6 2.2521 6.4960 -2.5220 13 7 2.4248 6.5024 -3.8257 14 14 1.8326 8.0815 -1.6277 15 1 1.6900 7.8077 -0.1752 16 1 2.9179 9.0722 -1.8409 17 1 0.5555 8.6248 -2.1561 18 7 1.7583 2.1039 -1.2953 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.9375 1.6746 1.0635 25 1 4.0114 0.5564 -0.3374 26 1 3.6796 4.1510 -3.0411 27 1 1.9456 3.8220 -3.2724 28 1 2.3340 7.3303 -4.3229 29 1 1.6371 1.4231 -2.0300 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261290456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:08 Heat of formation + Delta-G solvation = -10.948116 kcal Electronic energy + Delta-G solvation = -12772.324104 eV Core-core repulsion = 10503.240957 eV Total energy + Delta-G solvation = -2269.083147 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.20485 -36.57462 -34.35988 -32.75648 -30.46294 -28.67155 -26.77097 -23.94606 -22.49458 -20.96488 -19.38671 -16.92753 -16.20391 -15.93676 -14.76330 -14.52176 -14.18754 -13.74674 -13.54982 -13.06859 -12.92745 -12.24984 -11.66567 -11.53222 -11.36197 -11.20045 -10.89542 -10.84758 -10.68180 -10.17432 -9.90461 -9.42606 -8.76395 -8.43385 -7.30658 -6.03447 -4.07221 3.24480 3.33084 3.39922 3.44539 3.55801 4.46304 4.53848 4.65133 4.93471 5.00885 5.26427 5.31189 5.36635 5.52282 5.69638 5.85419 5.89748 6.03696 6.21185 6.28222 6.90817 7.14598 7.33883 7.68202 7.93699 8.20865 8.60070 8.88204 9.09537 9.57257 11.04588 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.041790 B = 0.009730 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.849841 B = 2877.099049 C = 3147.117566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.065 3.935 4 H 0.104 0.896 5 C -0.190 4.190 6 C 0.491 3.509 7 O -0.532 6.532 8 N -0.448 5.448 9 C 0.269 3.731 10 C -0.519 4.519 11 H 0.061 0.939 12 C 0.059 3.941 13 N -0.898 5.898 14 Si 0.902 3.098 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 N -0.434 5.434 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.263 0.737 29 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -12.556 6.328 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.044 4.044 4 H 0.122 0.878 5 C -0.232 4.232 6 C 0.275 3.725 7 O -0.407 6.407 8 N -0.270 5.270 9 C 0.151 3.849 10 C -0.558 4.558 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.538 5.538 14 Si 0.730 3.270 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 N -0.159 5.159 19 H 0.076 0.924 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.358 -11.534 6.293 13.562 hybrid contribution 0.344 0.193 0.217 0.450 sum -3.013 -11.342 6.510 13.420 Atomic orbital electron populations 1.21736 0.94749 1.01269 1.03035 1.21729 0.97160 0.94462 1.02586 1.22996 0.92840 0.94931 0.93646 0.87848 1.23102 0.97963 0.99664 1.02489 1.21068 0.84097 0.84769 0.82525 1.90683 1.25051 1.56624 1.68351 1.48357 1.06841 1.28669 1.43160 1.19324 0.98366 0.81253 0.85944 1.21430 1.47465 0.92286 0.94601 0.92118 1.24929 0.95307 0.99101 0.94902 1.69933 1.50011 1.27685 1.06145 0.86367 0.77863 0.82901 0.79849 1.19766 1.20921 1.20909 1.62946 1.30150 1.19273 1.03553 0.92444 0.91600 0.92985 0.91687 0.90761 0.88025 0.88545 0.93879 0.94063 0.92724 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.84 37.16 0.37 -1.06 15 2 C -0.12 -1.18 5.31 -26.73 -0.14 -1.33 15 3 C 0.07 0.90 3.67 -66.08 -0.24 0.66 15 4 H 0.10 1.47 8.14 -51.93 -0.42 1.04 15 5 C -0.19 -2.88 6.66 -26.39 -0.18 -3.05 15 6 C 0.49 10.83 8.15 -10.52 -0.09 10.74 15 7 O -0.53 -14.00 17.68 5.56 0.10 -13.90 15 8 N -0.45 -10.02 3.34 -61.11 -0.20 -10.22 15 9 C 0.27 7.21 5.82 -5.20 -0.03 7.18 15 10 C -0.52 -15.20 9.38 -34.45 -0.32 -15.52 15 11 H 0.06 1.81 7.81 -52.48 -0.41 1.40 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 13 N -0.90 -26.91 13.29 55.43 0.74 -26.17 15 14 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 15 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 18 N -0.43 -7.65 7.39 -3.17 -0.02 -7.67 15 19 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.06 0.70 7.97 -51.93 -0.41 0.28 15 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.06 0.60 8.01 -51.93 -0.42 0.19 15 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.10 1.40 8.14 -51.93 -0.42 0.97 15 25 H 0.10 1.23 7.91 -51.93 -0.41 0.82 15 26 H 0.04 1.26 8.02 -51.93 -0.42 0.85 15 27 H 0.04 1.11 8.14 -51.93 -0.42 0.69 15 28 H 0.26 7.40 8.31 -40.82 -0.34 7.07 15 29 H 0.32 4.96 8.47 -181.49 -1.54 3.42 15 LS Contribution 252.19 15.07 3.80 3.80 Total: -1.00 -33.23 252.19 -6.62 -39.84 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.28 Total: -2.25 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.73 Total: -0.76 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.51 Total: -44.06 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.10 Total: -13.90 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.23 -6.62 -39.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.897 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds