Wall clock time and date at job start Thu Apr 9 2020 14:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46932 * 2 1 4 4 H 1.09002 * 110.83876 * 54.30339 * 3 2 1 5 5 C 1.54799 * 110.94757 * 178.03830 * 3 2 1 6 6 C 1.51801 * 102.23313 * 142.17967 * 5 3 2 7 7 O 1.21282 * 126.04392 * 165.15725 * 6 5 3 8 8 N 1.34592 * 107.92473 * 345.17793 * 6 5 3 9 9 C 1.46504 * 123.53107 * 178.41786 * 8 6 5 10 10 C 1.50691 * 109.47296 * 274.97594 * 9 8 6 11 11 H 1.08005 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00261 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00063 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47344 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47519 * 120.00024 * 14 12 10 17 17 H 1.48503 * 109.47013 * 240.00301 * 14 12 10 18 18 N 1.36430 * 112.95615 * 358.39967 * 8 6 5 19 19 H 1.09006 * 109.46768 * 299.99705 * 1 2 3 20 20 H 1.08991 * 109.47554 * 60.00007 * 1 2 3 21 21 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46768 * 240.00295 * 2 1 3 23 23 H 1.08996 * 109.47186 * 120.00298 * 2 1 3 24 24 H 1.09003 * 110.85004 * 260.36935 * 5 3 2 25 25 H 1.09001 * 110.85194 * 23.79067 * 5 3 2 26 26 H 1.09006 * 109.46402 * 34.97881 * 9 8 6 27 27 H 1.09003 * 109.47139 * 154.97252 * 9 8 6 28 28 H 0.96999 * 120.00218 * 179.97438 * 13 12 10 29 29 H 1.00897 * 111.01571 * 256.76781 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 2.0062 0.8273 5 6 3.5866 1.4827 0.0495 6 6 3.9074 2.6521 -0.8637 7 8 4.9735 3.2250 -0.9420 8 7 2.7994 2.9413 -1.5711 9 6 2.7196 4.0403 -2.5366 10 6 2.3807 5.3191 -1.8153 11 1 2.2392 5.3140 -0.7446 12 6 2.2521 6.4960 -2.5220 13 7 2.4248 6.5024 -3.8257 14 14 1.8326 8.0815 -1.6277 15 1 1.6900 7.8077 -0.1752 16 1 2.9179 9.0722 -1.8409 17 1 0.5555 8.6248 -2.1561 18 7 1.7583 2.1039 -1.2953 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.9375 1.6746 1.0635 25 1 4.0114 0.5564 -0.3374 26 1 3.6796 4.1510 -3.0411 27 1 1.9456 3.8220 -3.2724 28 1 2.3340 7.3303 -4.3229 29 1 1.6371 1.4231 -2.0300 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261290456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:07 Heat of formation + Delta-G solvation = -35.151059 kcal Electronic energy + Delta-G solvation = -12773.373622 eV Core-core repulsion = 10503.240957 eV Total energy + Delta-G solvation = -2270.132665 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.75576 -38.24424 -35.95803 -34.62202 -31.89901 -30.23683 -28.57537 -25.50783 -24.09775 -22.05413 -21.03650 -18.87320 -17.95583 -17.71029 -16.41429 -16.23038 -15.59081 -15.15346 -14.80582 -14.55681 -14.24539 -14.04347 -13.54893 -13.03250 -12.71308 -12.64738 -12.50335 -12.34087 -11.98958 -11.83154 -11.70004 -11.13859 -10.68434 -10.49884 -9.01334 -8.24697 -6.40315 1.36244 1.38228 1.49394 1.56949 1.91478 2.38669 3.02950 3.23325 3.54133 3.81010 3.90739 4.25047 4.46951 4.59732 4.81062 4.85665 4.95559 4.98942 5.04397 5.19866 5.34661 5.40921 5.55323 5.69633 5.98383 6.16667 6.65200 6.89513 7.23198 7.40821 8.81447 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.041790 B = 0.009730 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.849841 B = 2877.099049 C = 3147.117566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.070 3.930 4 H 0.101 0.899 5 C -0.169 4.169 6 C 0.470 3.530 7 O -0.589 6.589 8 N -0.456 5.456 9 C 0.281 3.719 10 C -0.542 4.542 11 H 0.049 0.951 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.267 1.267 18 N -0.446 5.446 19 H 0.055 0.945 20 H 0.048 0.952 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.006 0.994 27 H 0.033 0.967 28 H 0.270 0.730 29 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -13.761 7.854 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.038 4.038 4 H 0.118 0.882 5 C -0.210 4.210 6 C 0.257 3.743 7 O -0.468 6.468 8 N -0.276 5.276 9 C 0.161 3.839 10 C -0.580 4.580 11 H 0.067 0.933 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.192 1.192 18 N -0.173 5.173 19 H 0.074 0.926 20 H 0.067 0.933 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.121 0.879 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.024 0.976 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.398 -12.781 7.827 15.619 hybrid contribution 0.630 0.515 -0.281 0.861 sum -3.768 -12.266 7.546 14.886 Atomic orbital electron populations 1.21736 0.94586 1.02330 1.02170 1.21722 0.97148 0.91402 1.04538 1.23197 0.92005 0.97303 0.91306 0.88151 1.23104 0.98852 0.97411 1.01628 1.22323 0.82943 0.86073 0.82961 1.90631 1.27090 1.59021 1.70091 1.48176 1.08525 1.28517 1.42378 1.18772 0.95829 0.82606 0.86652 1.21631 1.48387 0.93868 0.94161 0.93316 1.25843 0.94759 1.02627 0.95750 1.70032 1.50174 1.28971 1.07526 0.85295 0.78233 0.78271 0.78549 1.19517 1.20320 1.19191 1.62864 1.28575 1.20052 1.05781 0.92591 0.93256 0.90979 0.90538 0.87899 0.86029 0.85229 0.97640 0.94887 0.92154 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.84 71.98 0.71 -1.67 15 2 C -0.11 -1.69 5.31 30.59 0.16 -1.53 15 3 C 0.07 1.75 3.67 45.29 0.17 1.92 15 4 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 5 C -0.17 -4.65 6.66 30.81 0.21 -4.45 15 6 C 0.47 20.84 8.15 88.04 0.72 21.56 15 7 O -0.59 -32.04 17.68 -3.04 -0.05 -32.09 15 8 N -0.46 -20.75 3.34 -465.74 -1.55 -22.30 15 9 C 0.28 15.74 5.82 85.63 0.50 16.24 15 10 C -0.54 -32.61 9.38 25.60 0.24 -32.37 15 11 H 0.05 2.97 7.81 -2.91 -0.02 2.95 15 12 C 0.01 0.55 5.46 84.65 0.46 1.01 15 13 N -0.93 -56.50 13.29 21.45 0.28 -56.22 15 14 Si 0.97 46.04 29.54 68.60 2.03 48.06 15 15 H -0.27 -12.60 7.11 99.48 0.71 -11.90 15 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 18 N -0.45 -15.30 7.39 -163.93 -1.21 -16.51 15 19 H 0.05 0.90 8.14 -2.38 -0.02 0.88 15 20 H 0.05 0.94 7.97 -2.39 -0.02 0.92 15 21 H 0.07 0.87 8.14 -2.39 -0.02 0.85 15 22 H 0.08 1.06 8.01 -2.38 -0.02 1.05 15 23 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.12 2.94 8.14 -2.39 -0.02 2.92 15 25 H 0.13 2.77 7.91 -2.39 -0.02 2.75 15 26 H 0.01 0.35 8.02 -2.38 -0.02 0.33 15 27 H 0.03 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 29 H 0.34 9.97 8.47 -210.66 -1.78 8.18 15 Total: -1.00 -74.74 252.19 2.00 -72.73 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -0.65 Total: 5.61 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 3.16 Total: 0.72 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -2.48 Total: -95.03 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.74 2.00 -72.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.582 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds