Wall clock time and date at job start Thu Apr 9 2020 14:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47383 * 2 1 4 4 C 1.48136 * 110.99711 * 302.38415 * 3 2 1 5 5 C 1.54801 * 101.87668 * 148.11798 * 4 3 2 6 6 C 1.51805 * 102.22635 * 335.99865 * 5 4 3 7 7 O 1.21284 * 126.03675 * 195.08047 * 6 5 4 8 8 N 1.34589 * 107.92645 * 14.82632 * 6 5 4 9 9 C 1.46501 * 123.52703 * 181.59439 * 8 6 5 10 10 C 1.50698 * 109.47043 * 275.01940 * 9 8 6 11 11 H 1.08000 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00302 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99658 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00212 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47282 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47266 * 119.99927 * 14 12 10 17 17 H 1.48498 * 109.47043 * 239.99853 * 14 12 10 18 18 H 1.09004 * 109.46996 * 67.22708 * 1 2 3 19 19 H 1.08996 * 109.47474 * 187.22751 * 1 2 3 20 20 H 1.09000 * 109.47075 * 307.23155 * 1 2 3 21 21 H 1.08995 * 109.47145 * 239.99493 * 2 1 3 22 22 H 1.09001 * 109.46548 * 120.00152 * 2 1 3 23 23 H 1.09006 * 110.94889 * 266.26558 * 4 3 2 24 24 H 1.09002 * 110.95370 * 29.97068 * 4 3 2 25 25 H 1.08995 * 110.85066 * 217.81502 * 5 4 3 26 26 H 1.08996 * 110.85080 * 94.18337 * 5 4 3 27 27 H 1.08996 * 109.47227 * 35.01904 * 9 8 6 28 28 H 1.08999 * 109.46945 * 155.02019 * 9 8 6 29 29 H 0.96995 * 119.99468 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4983 2.1323 -1.1679 5 6 1.3823 3.5682 -0.6013 6 6 1.2594 3.3162 0.8906 7 8 0.8918 4.1191 1.7220 8 7 1.6252 2.0427 1.1271 9 6 1.6017 1.4277 2.4566 10 6 2.8844 1.7468 3.1803 11 1 3.6413 2.3480 2.6985 12 6 3.0915 1.2722 4.4582 13 7 2.1697 0.5405 5.0453 14 14 4.6811 1.6683 5.3556 15 1 5.5473 2.5018 4.4836 16 1 4.3731 2.4126 6.6031 17 1 5.3865 0.4061 5.6936 18 1 -0.3633 0.3978 -0.9476 19 1 -0.3634 -1.0194 0.1293 20 1 -0.3633 0.6218 0.8182 21 1 1.8933 -0.5139 -0.8899 22 1 1.8932 -0.5139 0.8900 23 1 2.2026 2.0971 -1.9992 24 1 0.5223 1.7524 -1.4697 25 1 0.4919 4.0660 -0.9853 26 1 2.2785 4.1470 -0.8245 27 1 0.7575 1.8198 3.0235 28 1 1.5009 0.3471 2.3552 29 1 2.3155 0.2063 5.9441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261302149.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:13 Heat of formation + Delta-G solvation = 10.573824 kcal Electronic energy + Delta-G solvation = -13174.099386 eV Core-core repulsion = 10905.949500 eV Total energy + Delta-G solvation = -2268.149886 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37272 -36.72832 -33.46475 -32.41089 -31.52655 -28.09927 -26.82012 -23.43515 -23.11891 -21.19771 -18.84174 -16.79175 -16.08739 -15.81657 -15.33910 -14.43472 -14.19327 -13.56445 -13.19066 -12.98973 -12.50265 -12.21818 -11.90883 -11.52712 -11.43139 -11.21129 -10.96793 -10.76074 -10.55354 -10.18904 -9.91087 -9.21801 -8.90383 -8.45063 -7.03208 -6.05875 -4.10079 3.29816 3.31875 3.38732 3.42225 3.54123 4.45693 4.69268 4.83247 5.05809 5.20749 5.28523 5.37488 5.49642 5.60972 5.72790 5.96055 6.07102 6.10007 6.31504 6.42858 6.62848 7.04564 7.27059 7.74989 7.93409 8.17323 8.56381 8.88537 9.12127 9.55156 11.01599 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.040411 B = 0.011892 C = 0.010590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.719320 B = 2354.033102 C = 2643.323814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.013 3.987 3 N -0.282 5.282 4 C 0.010 3.990 5 C -0.163 4.163 6 C 0.502 3.498 7 O -0.534 6.534 8 N -0.449 5.449 9 C 0.256 3.744 10 C -0.519 4.519 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.899 5.899 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.053 0.947 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 -1.098 -12.116 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.115 4.115 3 N -0.098 5.098 4 C -0.117 4.117 5 C -0.204 4.204 6 C 0.286 3.714 7 O -0.410 6.410 8 N -0.270 5.270 9 C 0.138 3.862 10 C -0.558 4.558 11 H 0.082 0.918 12 C -0.143 4.143 13 N -0.538 5.538 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.072 0.928 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.118 0.882 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.502 -0.824 -11.414 11.542 hybrid contribution -0.015 -0.009 0.457 0.457 sum -1.517 -0.833 -10.957 11.093 Atomic orbital electron populations 1.22368 0.97764 1.02647 1.01835 1.22854 0.93556 0.90948 1.04184 1.65978 1.49179 1.00412 0.94213 1.23776 1.00386 0.92755 0.94813 1.22674 1.04521 0.97744 0.95420 1.20642 0.78014 0.82361 0.90347 1.90688 1.48717 1.48772 1.52824 1.48501 1.62560 1.10756 1.05189 1.19474 0.98448 0.93900 0.74337 1.21456 1.02223 1.32637 0.99510 0.91822 1.24946 0.97261 0.95004 0.97081 1.69938 1.33823 1.35508 1.14562 0.86356 0.83013 0.78046 0.79544 1.19645 1.20901 1.20937 0.92819 0.91924 0.91942 0.89698 0.88553 0.88225 0.91827 0.88788 0.87813 0.94062 0.93859 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 9.23 37.16 0.34 -2.37 15 2 C 0.01 0.20 5.69 -3.82 -0.02 0.18 15 3 N -0.28 -5.10 5.74 -111.80 -0.64 -5.74 15 4 C 0.01 0.14 6.84 -2.19 -0.02 0.13 15 5 C -0.16 -2.50 7.11 -26.39 -0.19 -2.69 15 6 C 0.50 11.12 8.15 -10.52 -0.09 11.03 15 7 O -0.53 -14.08 17.70 5.55 0.10 -13.98 15 8 N -0.45 -10.01 2.28 -61.11 -0.14 -10.15 15 9 C 0.26 6.74 4.66 -5.19 -0.02 6.72 15 10 C -0.52 -15.06 9.38 -34.44 -0.32 -15.38 15 11 H 0.06 1.89 7.81 -52.49 -0.41 1.48 15 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 13 N -0.90 -26.59 13.29 55.43 0.74 -25.86 15 14 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 15 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 18 H 0.05 0.66 6.25 -51.93 -0.32 0.34 15 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.06 1.09 6.90 -51.93 -0.36 0.73 15 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.10 1.75 6.33 -51.93 -0.33 1.42 15 23 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.06 0.77 5.58 -51.93 -0.29 0.48 15 25 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 26 H 0.10 1.46 8.14 -51.93 -0.42 1.04 15 27 H 0.04 1.20 8.04 -51.93 -0.42 0.79 15 28 H 0.04 1.12 5.78 -51.93 -0.30 0.82 15 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 242.09 15.07 3.65 3.65 Total: -1.00 -32.82 242.09 -5.41 -38.22 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.68 Total: -2.55 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.41 Total: -0.79 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.04 Total: -41.75 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.10 Total: -13.98 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.82 -5.41 -38.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302149.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.798 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds