Wall clock time and date at job start Thu Apr 9 2020 14:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48509 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47172 * 299.99550 * 3 2 1 6 6 H 1.48495 * 109.47245 * 59.99976 * 3 2 1 7 7 C 1.37880 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99743 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47540 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47540 * 179.97438 * 11 10 9 13 13 C 1.53175 * 109.53913 * 65.44548 * 12 11 10 14 14 C 1.53092 * 109.16179 * 176.85000 * 13 12 11 15 15 O 1.42910 * 109.41107 * 302.39040 * 14 13 12 16 16 C 1.42900 * 114.09727 * 61.16189 * 15 14 13 17 17 C 1.53090 * 109.41229 * 298.83586 * 16 15 14 18 18 H 0.96995 * 119.99973 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.46854 * 60.00506 * 9 7 2 20 20 H 1.08997 * 109.47397 * 299.99938 * 9 7 2 21 21 H 1.09009 * 109.47020 * 60.00053 * 10 9 7 22 22 H 1.09005 * 109.47341 * 300.00316 * 10 9 7 23 23 H 1.09005 * 109.46474 * 59.99952 * 11 10 9 24 24 H 1.09005 * 109.47030 * 300.00468 * 11 10 9 25 25 H 1.08997 * 109.61228 * 305.22843 * 12 11 10 26 26 H 1.09006 * 109.52647 * 296.75300 * 13 12 11 27 27 H 1.08998 * 109.52537 * 56.94192 * 13 12 11 28 28 H 1.08998 * 109.48147 * 182.40843 * 14 13 12 29 29 H 1.08997 * 109.48550 * 62.37144 * 14 13 12 30 30 H 1.09003 * 109.47953 * 178.86010 * 16 15 14 31 31 H 1.08995 * 109.49265 * 58.82602 * 16 15 14 32 32 H 1.09001 * 109.52724 * 297.70937 * 17 16 15 33 33 H 1.09000 * 109.52338 * 177.51272 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9872 -0.0001 12 6 2.4745 -6.1501 -0.0008 13 6 3.2634 -6.1504 1.3122 14 6 4.1990 -7.3619 1.3361 15 8 3.4315 -8.5577 1.1832 16 6 2.7098 -8.6344 -0.0478 17 6 1.7145 -7.4740 -0.1272 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8902 21 1 2.8719 -3.6044 0.8906 22 1 2.8719 -3.6044 -0.8894 23 1 0.8539 -5.0446 -0.8904 24 1 0.8532 -5.0451 0.8896 25 1 3.1624 -6.0429 -0.8394 26 1 3.8510 -5.2350 1.3844 27 1 2.5718 -6.2076 2.1527 28 1 4.7319 -7.3910 2.2864 29 1 4.9163 -7.2835 0.5192 30 1 2.1699 -9.5802 -0.0943 31 1 3.4075 -8.5726 -0.8829 32 1 0.9916 -7.5579 0.6843 33 1 1.1942 -7.5052 -1.0845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300803573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:21 Heat of formation + Delta-G solvation = -87.541997 kcal Electronic energy + Delta-G solvation = -12637.741844 eV Core-core repulsion = 10468.877680 eV Total energy + Delta-G solvation = -2168.864164 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34539 -35.65888 -33.26580 -31.30502 -30.91753 -27.50630 -24.54436 -23.47086 -22.01745 -19.99570 -19.74715 -16.31081 -15.96180 -15.94558 -14.94867 -14.52997 -14.44358 -13.80871 -13.38214 -12.71331 -12.34491 -12.10442 -11.65914 -11.37105 -11.26258 -10.96973 -10.89237 -10.61852 -10.41470 -10.13976 -10.10663 -9.57686 -9.54005 -9.17218 -8.88797 -8.32390 -5.97444 -3.99572 3.31911 3.39199 3.43445 3.89978 4.47609 4.84230 4.90066 5.03113 5.10357 5.25781 5.38177 5.44890 5.55030 5.66956 5.79088 5.88449 5.97724 6.06280 6.15177 6.21039 6.34147 6.53109 6.58817 6.86279 6.98337 7.19669 7.22890 7.71991 7.87986 8.03899 8.47037 9.08326 9.64389 11.14012 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.076553 B = 0.006046 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.671796 B = 4630.265892 C = 4866.702441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.112 4.112 12 C -0.089 4.089 13 C -0.152 4.152 14 C 0.060 3.940 15 O -0.388 6.388 16 C 0.061 3.939 17 C -0.152 4.152 18 H 0.259 0.741 19 H 0.014 0.986 20 H 0.014 0.986 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -14.217 0.304 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.108 4.108 13 C -0.189 4.189 14 C -0.016 4.016 15 O -0.307 6.307 16 C -0.016 4.016 17 C -0.190 4.190 18 H 0.069 0.931 19 H 0.032 0.968 20 H 0.033 0.967 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.347 -14.244 0.444 15.221 hybrid contribution 0.351 1.281 -0.247 1.351 sum 5.698 -12.963 0.197 14.161 Atomic orbital electron populations 1.69978 1.06065 1.26401 1.51188 1.25040 0.94838 0.99246 0.95441 0.86559 0.80121 0.83898 0.77566 1.19769 1.21028 1.21023 1.21333 0.93035 0.91223 1.50121 0.92746 1.19112 0.94105 0.91519 0.97052 1.21657 0.99040 0.94041 1.00049 1.21683 0.97448 0.94367 1.01467 1.21248 0.97572 0.94634 0.97339 1.22287 0.99447 0.98598 0.98592 1.22618 0.92943 0.84620 1.01466 1.87886 1.63749 1.40108 1.38987 1.22567 0.93792 0.98734 0.86472 1.22271 0.98800 0.95192 1.02693 0.93113 0.96791 0.96738 0.93351 0.93699 0.92518 0.92503 0.91475 0.90214 0.91146 0.89198 0.93456 0.89338 0.93490 0.91143 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.30 4.92 -26.73 -0.13 -2.43 16 11 C -0.11 -1.93 4.69 -26.73 -0.13 -2.05 16 12 C -0.09 -1.26 2.27 -90.44 -0.21 -1.47 16 13 C -0.15 -2.05 5.10 -26.59 -0.14 -2.18 16 14 C 0.06 0.72 6.84 37.21 0.25 0.97 16 15 O -0.39 -5.16 10.77 -35.23 -0.38 -5.53 16 16 C 0.06 0.69 6.84 37.20 0.25 0.94 16 17 C -0.15 -1.86 5.42 -26.59 -0.14 -2.00 16 18 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 19 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 20 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.05 0.98 6.66 -51.92 -0.35 0.64 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.11 6.75 -51.93 -0.35 0.75 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 265.85 15.07 4.01 4.01 Total: -1.00 -30.78 265.85 -7.17 -37.95 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.73 Total: -4.95 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.78 Total: -21.67 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.78 -7.17 -37.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300803573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.593 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds