Wall clock time and date at job start Thu Apr 9 2020 14:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86796 * 120.00483 * 2 1 4 4 H 1.48504 * 109.46890 * 240.00117 * 3 2 1 5 5 H 1.48503 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47367 * 119.99726 * 3 2 1 7 7 C 1.38641 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99670 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.42898 * 117.00215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.54246 * 108.89840 * 296.39809 * 11 10 9 13 13 C 1.50551 * 108.48820 * 159.17552 * 12 11 10 14 14 C 1.54059 * 112.41467 * 94.26568 * 13 12 11 15 15 C 1.54072 * 112.81751 * 318.28434 * 14 13 12 16 16 C 1.50475 * 112.49368 * 318.27849 * 15 14 13 17 17 C 1.45539 * 108.90122 * 173.60607 * 11 10 9 18 18 H 0.97010 * 119.99847 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47259 * 300.00352 * 10 9 7 20 20 H 1.09001 * 109.47074 * 60.00374 * 10 9 7 21 21 H 1.09000 * 108.87638 * 54.99859 * 11 10 9 22 22 H 1.09001 * 109.62686 * 278.97938 * 12 11 10 23 23 H 1.09003 * 109.62383 * 39.54791 * 12 11 10 24 24 H 1.08998 * 108.91961 * 333.51164 * 13 12 11 25 25 H 1.08999 * 108.91653 * 215.01919 * 13 12 11 26 26 H 1.09000 * 108.81846 * 197.42154 * 14 13 12 27 27 H 1.09004 * 108.72528 * 79.08259 * 14 13 12 28 28 H 1.09003 * 108.87842 * 197.50758 * 15 14 13 29 29 H 1.08992 * 108.87850 * 79.05827 * 15 14 13 30 30 H 1.09002 * 109.62942 * 334.45043 * 16 15 14 31 31 H 1.09002 * 109.63043 * 213.86433 * 16 15 14 32 32 H 1.09005 * 108.89099 * 303.44891 * 17 11 10 33 33 H 1.09004 * 108.89303 * 62.02755 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3342 -2.3692 0.0005 10 6 2.1124 -3.5677 0.0005 11 6 1.1804 -4.7810 -0.0001 12 6 0.3610 -4.7822 1.3067 13 6 -0.8697 -5.6238 1.0978 14 6 -0.6708 -7.0801 1.5595 15 6 0.7055 -7.6493 1.1651 16 6 1.1104 -7.2610 -0.2311 17 6 1.9784 -5.9884 -0.1534 18 1 -0.4850 0.8401 -0.0004 19 1 2.7413 -3.5926 -0.8894 20 1 2.7412 -3.5926 0.8906 21 1 0.4967 -4.7000 -0.8452 22 1 0.9608 -5.2017 2.1145 23 1 0.0681 -3.7623 1.5561 24 1 -1.1236 -5.6215 0.0378 25 1 -1.6963 -5.1861 1.6575 26 1 -1.4485 -7.6998 1.1131 27 1 -0.7699 -7.1199 2.6443 28 1 0.6699 -8.7367 1.2324 29 1 1.4541 -7.2788 1.8653 30 1 0.2207 -7.0614 -0.8283 31 1 1.6851 -8.0691 -0.6839 32 1 2.5690 -5.9076 -1.0661 33 1 2.6543 -6.0751 0.6973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300957594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:23 Heat of formation + Delta-G solvation = -65.997742 kcal Electronic energy + Delta-G solvation = -13049.727613 eV Core-core repulsion = 10881.797679 eV Total energy + Delta-G solvation = -2167.929935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.83317 -35.95211 -32.79387 -31.77284 -31.22908 -26.31695 -24.54510 -23.99736 -22.09844 -19.77914 -18.93994 -17.37302 -15.46427 -15.22931 -14.66620 -14.31312 -13.96802 -13.33115 -13.09879 -12.66445 -12.58855 -11.91192 -11.77182 -11.52469 -11.21651 -10.91063 -10.47023 -10.36618 -10.27229 -10.13422 -9.98980 -9.83031 -9.63556 -9.32706 -9.01199 -7.89061 -5.89087 -3.51833 3.34928 3.36573 3.39811 4.35717 4.86413 4.99586 5.08770 5.40157 5.41025 5.49443 5.53015 5.63422 5.78174 5.81363 5.94709 6.09318 6.21967 6.30991 6.33432 6.36119 6.45560 6.45641 6.53718 6.61776 6.71411 6.79671 6.86459 7.08005 7.19758 7.53291 8.49446 9.54566 10.26238 11.32173 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068902 B = 0.007685 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.276848 B = 3642.399624 C = 3902.338485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.022 3.978 3 Si 0.923 3.077 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.359 4.359 8 H 0.059 0.941 9 O -0.293 6.293 10 C 0.076 3.924 11 C -0.082 4.082 12 C -0.106 4.106 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.108 4.108 18 H 0.257 0.743 19 H 0.018 0.982 20 H 0.019 0.981 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.082 0.918 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -12.879 1.601 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.751 3.249 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.439 4.439 8 H 0.077 0.923 9 O -0.208 6.208 10 C -0.002 4.002 11 C -0.101 4.101 12 C -0.143 4.143 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.146 4.146 18 H 0.067 0.933 19 H 0.036 0.964 20 H 0.037 0.963 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.960 -12.770 1.603 12.906 hybrid contribution 0.778 0.848 -0.019 1.151 sum 1.738 -11.922 1.584 12.152 Atomic orbital electron populations 1.70011 1.05345 1.25850 1.52083 1.24927 0.95639 0.97637 0.99385 0.86073 0.78551 0.81964 0.78343 1.20464 1.20896 1.20453 1.20768 0.90092 0.82989 1.50003 0.92294 1.85616 1.31691 1.10318 1.93199 1.22223 0.93029 0.87518 0.97437 1.19979 0.97838 0.93412 0.98832 1.21295 0.95559 1.01001 0.96477 1.21346 0.98629 0.94007 1.01403 1.21927 0.96575 0.96511 1.00277 1.21329 0.97506 0.99302 0.97285 1.21301 0.99863 0.97051 0.97007 1.20464 0.98188 0.94371 1.01556 0.93283 0.96416 0.96280 0.91227 0.92824 0.89946 0.92239 0.92637 0.92929 0.92784 0.93055 0.92133 0.91616 0.92473 0.92597 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.36 13.67 55.48 0.76 -27.60 16 2 C 0.02 0.66 5.49 -17.51 -0.10 0.57 16 3 Si 0.92 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.36 -10.87 9.89 30.88 0.31 -10.56 16 8 H 0.06 1.68 7.77 -52.48 -0.41 1.28 16 9 O -0.29 -8.59 8.99 -16.49 -0.15 -8.74 16 10 C 0.08 1.73 5.30 37.16 0.20 1.93 16 11 C -0.08 -1.53 1.94 -93.49 -0.18 -1.71 16 12 C -0.11 -1.92 4.95 -27.30 -0.14 -2.06 16 13 C -0.12 -1.79 5.32 -27.40 -0.15 -1.94 16 14 C -0.12 -1.45 5.85 -25.62 -0.15 -1.60 16 15 C -0.12 -1.40 5.31 -27.43 -0.15 -1.54 16 16 C -0.11 -1.45 5.61 -27.34 -0.15 -1.60 16 17 C -0.11 -1.62 4.44 -29.60 -0.13 -1.75 16 18 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 19 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 22 H 0.05 0.90 6.97 -51.93 -0.36 0.53 16 23 H 0.08 1.82 7.33 -51.93 -0.38 1.44 16 24 H 0.06 0.94 6.63 -51.93 -0.34 0.59 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.75 6.62 -51.93 -0.34 0.41 16 30 H 0.07 0.86 6.98 -51.93 -0.36 0.49 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.06 0.82 7.46 -51.93 -0.39 0.44 16 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -32.34 258.13 -6.64 -38.98 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.48 Total: -3.76 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -0.64 Total: -20.26 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.76 Total: -27.60 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.15 Total: -8.74 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.34 -6.64 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300957594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.018 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds