Wall clock time and date at job start Thu Apr 9 2020 14:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86796 * 120.00483 * 2 1 4 4 H 1.48504 * 109.46890 * 240.00117 * 3 2 1 5 5 H 1.48503 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47367 * 119.99726 * 3 2 1 7 7 C 1.38641 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99670 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.42898 * 117.00215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.54246 * 108.89840 * 296.39809 * 11 10 9 13 13 C 1.50551 * 108.48820 * 159.17552 * 12 11 10 14 14 C 1.54059 * 112.41467 * 94.26568 * 13 12 11 15 15 C 1.54072 * 112.81751 * 318.28434 * 14 13 12 16 16 C 1.50475 * 112.49368 * 318.27849 * 15 14 13 17 17 C 1.45539 * 108.90122 * 173.60607 * 11 10 9 18 18 H 0.97010 * 119.99847 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47259 * 300.00352 * 10 9 7 20 20 H 1.09001 * 109.47074 * 60.00374 * 10 9 7 21 21 H 1.09000 * 108.87638 * 54.99859 * 11 10 9 22 22 H 1.09001 * 109.62686 * 278.97938 * 12 11 10 23 23 H 1.09003 * 109.62383 * 39.54791 * 12 11 10 24 24 H 1.08998 * 108.91961 * 333.51164 * 13 12 11 25 25 H 1.08999 * 108.91653 * 215.01919 * 13 12 11 26 26 H 1.09000 * 108.81846 * 197.42154 * 14 13 12 27 27 H 1.09004 * 108.72528 * 79.08259 * 14 13 12 28 28 H 1.09003 * 108.87842 * 197.50758 * 15 14 13 29 29 H 1.08992 * 108.87850 * 79.05827 * 15 14 13 30 30 H 1.09002 * 109.62942 * 334.45043 * 16 15 14 31 31 H 1.09002 * 109.63043 * 213.86433 * 16 15 14 32 32 H 1.09005 * 108.89099 * 303.44891 * 17 11 10 33 33 H 1.09004 * 108.89303 * 62.02755 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3342 -2.3692 0.0005 10 6 2.1124 -3.5677 0.0005 11 6 1.1804 -4.7810 -0.0001 12 6 0.3610 -4.7822 1.3067 13 6 -0.8697 -5.6238 1.0978 14 6 -0.6708 -7.0801 1.5595 15 6 0.7055 -7.6493 1.1651 16 6 1.1104 -7.2610 -0.2311 17 6 1.9784 -5.9884 -0.1534 18 1 -0.4850 0.8401 -0.0004 19 1 2.7413 -3.5926 -0.8894 20 1 2.7412 -3.5926 0.8906 21 1 0.4967 -4.7000 -0.8452 22 1 0.9608 -5.2017 2.1145 23 1 0.0681 -3.7623 1.5561 24 1 -1.1236 -5.6215 0.0378 25 1 -1.6963 -5.1861 1.6575 26 1 -1.4485 -7.6998 1.1131 27 1 -0.7699 -7.1199 2.6443 28 1 0.6699 -8.7367 1.2324 29 1 1.4541 -7.2788 1.8653 30 1 0.2207 -7.0614 -0.8283 31 1 1.6851 -8.0691 -0.6839 32 1 2.5690 -5.9076 -1.0661 33 1 2.6543 -6.0751 0.6973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300957594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:22 Heat of formation + Delta-G solvation = -85.969906 kcal Electronic energy + Delta-G solvation = -13050.593671 eV Core-core repulsion = 10881.797679 eV Total energy + Delta-G solvation = -2168.795993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20698 -37.93466 -34.41973 -33.39170 -32.85349 -27.98126 -26.38139 -25.45876 -23.58760 -21.21457 -20.09507 -19.56718 -17.39142 -16.68736 -16.23653 -15.88616 -15.47588 -15.00749 -14.66045 -14.17355 -13.81283 -13.62287 -13.22332 -12.97715 -12.96578 -12.70544 -12.15622 -11.79975 -11.63467 -11.48363 -11.27639 -11.23685 -11.15825 -11.09934 -10.87437 -10.14418 -8.18370 -5.88168 1.37756 1.46059 1.53130 2.32713 3.13817 3.54303 3.71506 3.99544 4.11292 4.25414 4.32611 4.41309 4.46232 4.54631 4.62760 4.69813 4.77445 4.93129 4.98929 5.08958 5.14092 5.20883 5.26588 5.31565 5.37060 5.41236 5.45087 5.58482 5.60648 5.69113 6.20259 7.24093 8.07056 9.06377 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068902 B = 0.007685 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.276848 B = 3642.399624 C = 3902.338485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.042 4.042 3 Si 1.006 2.994 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.384 4.384 8 H 0.069 0.931 9 O -0.332 6.332 10 C 0.068 3.932 11 C -0.070 4.070 12 C -0.100 4.100 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.109 4.109 17 C -0.107 4.107 18 H 0.261 0.739 19 H 0.021 0.979 20 H 0.022 0.978 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -13.995 1.774 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.235 4.235 3 Si 0.828 3.172 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.087 0.913 9 O -0.248 6.248 10 C -0.009 4.009 11 C -0.089 4.089 12 C -0.138 4.138 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.147 4.147 17 C -0.145 4.145 18 H 0.069 0.931 19 H 0.039 0.961 20 H 0.041 0.959 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.047 -13.918 1.776 14.179 hybrid contribution 0.448 1.149 -0.078 1.235 sum 2.494 -12.769 1.698 13.121 Atomic orbital electron populations 1.70197 1.07575 1.27264 1.53242 1.26245 0.96787 1.02027 0.98442 0.84825 0.77264 0.75862 0.79281 1.18864 1.20198 1.18864 1.21321 0.90798 0.83917 1.50247 0.91347 1.85572 1.33966 1.11796 1.93446 1.22570 0.93903 0.86943 0.97516 1.19975 0.97187 0.93403 0.98305 1.21189 0.97110 0.98734 0.96746 1.21303 0.96899 0.95972 1.01057 1.21891 0.97860 0.94051 1.00954 1.21350 0.96686 1.00884 0.96540 1.21285 0.99450 0.96190 0.97743 1.20446 0.98198 0.93672 1.02150 0.93063 0.96107 0.95946 0.93100 0.91280 0.95045 0.92981 0.93097 0.91223 0.91845 0.90446 0.92434 0.92200 0.89968 0.92153 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.46 13.67 21.61 0.30 -61.17 16 2 C -0.04 -2.56 5.49 84.83 0.47 -2.09 16 3 Si 1.01 46.32 29.55 68.60 2.03 48.35 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.38 -23.77 9.89 67.92 0.67 -23.10 16 8 H 0.07 3.95 7.77 -2.91 -0.02 3.93 16 9 O -0.33 -20.27 8.99 -81.91 -0.74 -21.01 16 10 C 0.07 3.18 5.30 71.98 0.38 3.56 16 11 C -0.07 -2.66 1.94 -12.65 -0.02 -2.68 16 12 C -0.10 -3.73 4.95 30.22 0.15 -3.58 16 13 C -0.11 -3.52 5.32 30.16 0.16 -3.36 16 14 C -0.11 -2.49 5.85 31.32 0.18 -2.31 16 15 C -0.12 -2.41 5.31 30.14 0.16 -2.25 16 16 C -0.11 -2.45 5.61 30.20 0.17 -2.28 16 17 C -0.11 -3.04 4.44 28.74 0.13 -2.91 16 18 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 19 H 0.02 0.95 8.05 -2.39 -0.02 0.93 16 20 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.05 2.09 7.46 -2.39 -0.02 2.07 16 22 H 0.07 2.30 6.97 -2.39 -0.02 2.28 16 23 H 0.03 1.46 7.33 -2.39 -0.02 1.45 16 24 H 0.05 1.65 6.63 -2.39 -0.02 1.64 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.24 6.62 -2.39 -0.02 1.22 16 30 H 0.06 1.43 6.98 -2.39 -0.02 1.41 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.66 8.04 -2.38 -0.02 1.64 16 33 H 0.07 1.77 7.46 -2.38 -0.02 1.75 16 Total: -1.00 -71.67 258.13 5.09 -66.59 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.05 Total: 8.24 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 2.45 Total: -41.00 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.74 Total: -21.01 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -71.67 5.09 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300957594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.383 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds