Wall clock time and date at job start Thu Apr 9 2020 14:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99845 * 2 1 4 4 H 1.48504 * 109.46959 * 269.99693 * 3 2 1 5 5 H 1.48499 * 109.47207 * 29.99708 * 3 2 1 6 6 H 1.48497 * 109.47149 * 149.99829 * 3 2 1 7 7 C 1.38805 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99769 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00010 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.02071 * 326.39239 * 10 9 7 12 12 C 1.53877 * 110.03401 * 87.83235 * 10 9 7 13 13 C 1.54260 * 106.59871 * 119.28365 * 12 10 9 14 14 C 1.54887 * 104.19819 * 23.61006 * 13 12 10 15 15 C 1.54271 * 110.03413 * 204.99847 * 10 9 7 16 16 H 1.08999 * 110.48163 * 335.91835 * 15 10 9 17 17 C 1.50697 * 110.48405 * 98.42325 * 15 10 9 18 18 N 1.34784 * 119.99774 * 180.02562 * 17 15 10 19 19 O 1.21283 * 120.00521 * 359.73089 * 17 15 10 20 20 H 0.97004 * 120.00461 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99863 * 359.97438 * 9 7 2 22 22 H 1.09004 * 110.03313 * 238.56944 * 12 10 9 23 23 H 1.08991 * 110.03079 * 359.94798 * 12 10 9 24 24 H 1.08997 * 110.48841 * 142.28648 * 13 12 10 25 25 H 1.08997 * 110.48941 * 264.93373 * 13 12 10 26 26 H 1.09000 * 110.76170 * 203.74283 * 14 13 12 27 27 H 1.09001 * 110.75894 * 80.37194 * 14 13 12 28 28 H 0.96999 * 120.00044 * 179.72920 * 18 17 15 29 29 H 0.97005 * 119.99846 * 359.72750 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9833 -3.5534 -0.5663 12 6 2.3690 -4.0859 1.4452 13 6 1.6738 -5.4461 1.6601 14 6 1.5227 -6.0254 0.2316 15 6 1.1848 -4.7712 -0.6120 16 1 0.1278 -4.5211 -0.5207 17 6 1.5500 -4.9933 -2.0570 18 7 0.9019 -5.9282 -2.7799 19 8 2.4235 -4.3271 -2.5711 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3881 0.0005 22 1 3.4455 -4.1914 1.5799 23 1 1.9757 -3.3498 2.1461 24 1 2.2949 -6.0993 2.2729 25 1 0.6957 -5.3061 2.1203 26 1 0.7081 -6.7485 0.1921 27 1 2.4570 -6.4760 -0.1034 28 1 1.1343 -6.0684 -3.7112 29 1 0.2031 -6.4608 -2.3689 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306363509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:32 Heat of formation + Delta-G solvation = -42.257296 kcal Electronic energy + Delta-G solvation = -12870.025705 eV Core-core repulsion = 10599.584890 eV Total energy + Delta-G solvation = -2270.440815 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.53571 -36.86733 -33.67425 -33.14517 -30.46772 -28.68618 -26.53087 -23.33407 -21.72530 -19.98772 -18.96459 -17.53338 -16.59536 -16.38220 -15.21671 -14.39762 -14.23675 -13.99311 -13.20244 -12.81150 -12.65451 -11.77810 -11.49799 -11.15767 -10.71386 -10.63577 -10.61280 -10.37665 -10.03995 -9.83378 -9.55042 -9.39589 -9.34616 -8.79526 -6.84647 -5.66944 -2.94150 3.08536 3.51560 3.56449 3.57928 3.86719 4.69001 4.97369 5.01401 5.15065 5.61429 5.68422 5.81593 5.86034 5.94921 6.05599 6.13814 6.21500 6.47193 6.59145 6.73372 6.95148 7.03756 7.24671 7.62701 7.83339 8.52219 8.65822 9.62995 10.20238 10.54983 11.56268 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.010565 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.810207 B = 2649.540839 C = 3003.310867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.186 3.814 11 H 0.070 0.930 12 C -0.147 4.147 13 C -0.120 4.120 14 C -0.110 4.110 15 C -0.123 4.123 16 H 0.101 0.899 17 C 0.526 3.474 18 N -0.864 5.864 19 O -0.530 6.530 20 H 0.253 0.747 21 H 0.381 0.619 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.394 0.606 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -14.183 -0.087 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.360 4.360 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.075 3.925 11 H 0.088 0.912 12 C -0.188 4.188 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.146 4.146 16 H 0.119 0.881 17 C 0.311 3.689 18 N -0.428 5.428 19 O -0.405 6.405 20 H 0.063 0.937 21 H 0.215 0.785 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.224 0.776 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.961 -13.468 -0.249 13.505 hybrid contribution -0.256 0.598 -0.254 0.698 sum 0.705 -12.870 -0.502 12.899 Atomic orbital electron populations 1.69657 1.05070 1.25442 1.58535 1.24706 0.95515 0.97596 1.03420 0.86188 0.78636 0.83926 0.77491 1.21823 1.21918 1.20780 1.19276 0.91086 0.84075 1.41518 0.91160 1.42445 1.05425 0.99780 1.88204 1.20784 0.94769 0.84742 0.92181 0.91209 1.23011 0.99133 0.95879 1.00784 1.22304 1.00714 0.97301 0.95439 1.22407 1.01075 0.95519 0.95848 1.22513 1.03010 0.98368 0.90679 0.88123 1.20667 0.80880 0.78318 0.89046 1.43925 1.42177 1.41284 1.15397 1.90742 1.31486 1.45872 1.72353 0.93702 0.78534 0.93038 0.90696 0.92391 0.91767 0.91660 0.91475 0.77577 0.77545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.11 13.06 55.49 0.72 -28.39 15 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 15 3 Si 0.91 23.38 29.55 -169.99 -5.02 18.35 15 4 H -0.29 -7.53 7.11 56.52 0.40 -7.13 15 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 15 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 7 C -0.23 -6.66 9.96 -15.06 -0.15 -6.81 15 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 15 9 N -0.72 -18.77 5.03 -52.34 -0.26 -19.04 15 10 C 0.19 3.96 2.94 -66.81 -0.20 3.76 15 11 H 0.07 1.66 6.79 -51.93 -0.35 1.31 15 12 C -0.15 -2.69 6.59 -25.61 -0.17 -2.86 15 13 C -0.12 -1.68 6.83 -25.08 -0.17 -1.85 15 14 C -0.11 -1.42 6.31 -24.74 -0.16 -1.58 15 15 C -0.12 -2.07 2.95 -90.11 -0.27 -2.34 15 16 H 0.10 1.68 7.74 -51.93 -0.40 1.27 15 17 C 0.53 9.13 7.40 -10.98 -0.08 9.05 15 18 N -0.86 -10.19 8.86 31.22 0.28 -9.91 15 19 O -0.53 -11.91 16.26 5.56 0.09 -11.82 15 20 H 0.25 7.61 8.31 -40.82 -0.34 7.27 15 21 H 0.38 10.37 7.55 -40.82 -0.31 10.07 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.07 1.53 7.92 -51.93 -0.41 1.12 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 27 H 0.07 0.85 8.05 -51.93 -0.42 0.43 15 28 H 0.39 4.15 8.93 -40.82 -0.36 3.78 15 29 H 0.40 3.34 8.83 -40.82 -0.36 2.98 15 LS Contribution 247.07 15.07 3.72 3.72 Total: -1.00 -34.35 247.07 -5.61 -39.96 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.85 Total: 10.36 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.29 Total: -3.23 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.74 Total: -57.34 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -34.35 -5.61 -39.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306363509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.295 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds