Wall clock time and date at job start Thu Apr 9 2020 14:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99845 * 2 1 4 4 H 1.48504 * 109.46959 * 269.99693 * 3 2 1 5 5 H 1.48499 * 109.47207 * 29.99708 * 3 2 1 6 6 H 1.48497 * 109.47149 * 149.99829 * 3 2 1 7 7 C 1.38805 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99769 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00010 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.02071 * 326.39239 * 10 9 7 12 12 C 1.53877 * 110.03401 * 87.83235 * 10 9 7 13 13 C 1.54260 * 106.59871 * 119.28365 * 12 10 9 14 14 C 1.54887 * 104.19819 * 23.61006 * 13 12 10 15 15 C 1.54271 * 110.03413 * 204.99847 * 10 9 7 16 16 H 1.08999 * 110.48163 * 335.91835 * 15 10 9 17 17 C 1.50697 * 110.48405 * 98.42325 * 15 10 9 18 18 N 1.34784 * 119.99774 * 180.02562 * 17 15 10 19 19 O 1.21283 * 120.00521 * 359.73089 * 17 15 10 20 20 H 0.97004 * 120.00461 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99863 * 359.97438 * 9 7 2 22 22 H 1.09004 * 110.03313 * 238.56944 * 12 10 9 23 23 H 1.08991 * 110.03079 * 359.94798 * 12 10 9 24 24 H 1.08997 * 110.48841 * 142.28648 * 13 12 10 25 25 H 1.08997 * 110.48941 * 264.93373 * 13 12 10 26 26 H 1.09000 * 110.76170 * 203.74283 * 14 13 12 27 27 H 1.09001 * 110.75894 * 80.37194 * 14 13 12 28 28 H 0.96999 * 120.00044 * 179.72920 * 18 17 15 29 29 H 0.97005 * 119.99846 * 359.72750 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9833 -3.5534 -0.5663 12 6 2.3690 -4.0859 1.4452 13 6 1.6738 -5.4461 1.6601 14 6 1.5227 -6.0254 0.2316 15 6 1.1848 -4.7712 -0.6120 16 1 0.1278 -4.5211 -0.5207 17 6 1.5500 -4.9933 -2.0570 18 7 0.9019 -5.9282 -2.7799 19 8 2.4235 -4.3271 -2.5711 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3881 0.0005 22 1 3.4455 -4.1914 1.5799 23 1 1.9757 -3.3498 2.1461 24 1 2.2949 -6.0993 2.2729 25 1 0.6957 -5.3061 2.1203 26 1 0.7081 -6.7485 0.1921 27 1 2.4570 -6.4760 -0.1034 28 1 1.1343 -6.0684 -3.7112 29 1 0.2031 -6.4608 -2.3689 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306363509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:31 Heat of formation + Delta-G solvation = -70.010834 kcal Electronic energy + Delta-G solvation = -12871.229189 eV Core-core repulsion = 10599.584890 eV Total energy + Delta-G solvation = -2271.644299 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.93865 -38.34764 -35.53650 -34.53905 -32.46386 -30.01398 -28.21381 -25.36646 -23.09514 -21.28308 -20.49428 -19.31625 -18.13472 -17.79734 -16.81381 -16.03819 -15.72938 -15.54073 -15.11846 -14.36197 -14.15883 -13.42411 -13.15987 -12.84699 -12.59612 -12.36206 -12.13631 -11.86795 -11.71727 -11.57033 -11.30800 -10.93943 -10.78209 -10.58983 -8.97319 -7.94471 -5.21028 1.43877 1.46881 1.54785 1.73094 2.55148 2.69960 3.37650 3.64548 3.79778 3.93855 4.25948 4.44542 4.55096 4.65732 4.74394 4.89505 4.93281 5.11946 5.25559 5.38097 5.48516 5.50671 5.63782 5.98413 6.29365 6.54972 7.34424 7.45884 8.11129 8.35064 9.29138 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.010565 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.810207 B = 2649.540839 C = 3003.310867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.174 3.826 11 H 0.036 0.964 12 C -0.144 4.144 13 C -0.110 4.110 14 C -0.096 4.096 15 C -0.119 4.119 16 H 0.105 0.895 17 C 0.521 3.479 18 N -0.833 5.833 19 O -0.592 6.592 20 H 0.251 0.749 21 H 0.372 0.628 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.405 0.595 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -16.196 0.288 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.368 4.368 8 H 0.082 0.918 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.054 0.946 12 C -0.184 4.184 13 C -0.148 4.148 14 C -0.133 4.133 15 C -0.141 4.141 16 H 0.123 0.877 17 C 0.307 3.693 18 N -0.397 5.397 19 O -0.472 6.472 20 H 0.060 0.940 21 H 0.205 0.795 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.236 0.764 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.679 -15.575 0.129 15.590 hybrid contribution -0.160 1.142 -0.398 1.220 sum 0.518 -14.433 -0.269 14.444 Atomic orbital electron populations 1.69793 1.06328 1.25916 1.60022 1.25481 0.96472 1.00789 1.04082 0.85190 0.77825 0.79830 0.77276 1.21881 1.21571 1.19625 1.19564 0.91090 0.85681 1.40431 0.91787 1.42567 1.05081 1.00778 1.88485 1.21001 0.93974 0.84534 0.94020 0.94627 1.22826 0.99886 0.98074 0.97640 1.22277 1.01004 0.94721 0.96803 1.22440 1.03124 0.94177 0.93602 1.22428 1.01983 0.98708 0.91011 0.87732 1.20812 0.80439 0.78551 0.89483 1.43600 1.41193 1.39380 1.15552 1.90724 1.34485 1.48600 1.73422 0.94040 0.79522 0.92653 0.93469 0.89522 0.91047 0.87168 0.90791 0.76381 0.75027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.35 13.06 21.65 0.28 -61.07 15 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 15 3 Si 0.97 48.88 29.55 68.60 2.03 50.91 15 4 H -0.29 -14.62 7.11 99.48 0.71 -13.92 15 5 H -0.29 -14.33 7.11 99.48 0.71 -13.63 15 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 7 C -0.24 -14.15 9.96 84.03 0.84 -13.31 15 8 H 0.06 3.83 7.83 -2.91 -0.02 3.80 15 9 N -0.73 -39.21 5.03 -319.51 -1.61 -40.81 15 10 C 0.17 7.49 2.94 45.72 0.13 7.63 15 11 H 0.04 1.77 6.79 -2.39 -0.02 1.76 15 12 C -0.14 -5.19 6.59 31.32 0.21 -4.98 15 13 C -0.11 -2.73 6.83 31.67 0.22 -2.51 15 14 C -0.10 -2.08 6.31 31.88 0.20 -1.88 15 15 C -0.12 -3.82 2.95 -10.47 -0.03 -3.85 15 16 H 0.10 3.30 7.74 -2.39 -0.02 3.28 15 17 C 0.52 17.56 7.40 87.65 0.65 18.21 15 18 N -0.83 -17.38 8.86 -173.52 -1.54 -18.92 15 19 O -0.59 -27.13 16.26 -3.04 -0.05 -27.18 15 20 H 0.25 15.32 8.31 -92.71 -0.77 14.55 15 21 H 0.37 20.85 7.55 -92.71 -0.70 20.15 15 22 H 0.05 1.90 8.14 -2.38 -0.02 1.88 15 23 H 0.05 1.95 7.92 -2.39 -0.02 1.93 15 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.07 1.57 8.05 -2.39 -0.02 1.55 15 28 H 0.40 7.50 8.93 -92.71 -0.83 6.67 15 29 H 0.42 5.34 8.83 -92.70 -0.82 4.52 15 Total: -1.00 -77.45 247.07 0.63 -76.83 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -1.17 Total: 25.10 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 2.68 Total: -4.86 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -2.86 Total: -120.80 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -77.45 0.63 -76.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306363509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.816 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds