Wall clock time and date at job start Thu Apr 9 2020 14:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.08996 * 108.56779 * 34.99853 * 10 9 7 12 12 C 1.51781 * 108.61220 * 152.93653 * 10 9 7 13 13 C 1.52990 * 110.87809 * 188.11829 * 12 10 9 14 14 N 1.47193 * 108.66445 * 273.53336 * 13 12 10 15 15 C 1.33363 * 120.42970 * 71.96454 * 14 13 12 16 16 O 1.21286 * 119.89302 * 179.71876 * 15 14 13 17 17 C 1.51423 * 120.21934 * 359.72971 * 15 14 13 18 18 C 1.51792 * 108.61477 * 277.06310 * 10 9 7 19 19 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 21 21 H 1.08994 * 109.19768 * 308.48258 * 12 10 9 22 22 H 1.09003 * 109.19735 * 67.80961 * 12 10 9 23 23 H 1.09004 * 109.60663 * 33.28958 * 13 12 10 24 24 H 1.09004 * 109.60356 * 153.61569 * 13 12 10 25 25 H 0.97007 * 119.78026 * 251.93580 * 14 13 12 26 26 H 1.09005 * 109.63239 * 48.44823 * 17 15 14 27 27 H 1.08994 * 109.63810 * 169.04706 * 17 15 14 28 28 H 1.09002 * 109.22478 * 292.40330 * 18 10 9 29 29 H 1.09001 * 109.22304 * 51.75071 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 1 2.9672 -3.5356 0.5818 12 6 1.1939 -4.7185 0.6485 13 6 1.9818 -6.0141 0.8510 14 7 1.8867 -6.8201 -0.3770 15 6 2.5408 -6.4516 -1.4792 16 8 2.4596 -7.1258 -2.4841 17 6 3.3848 -5.1944 -1.4801 18 6 2.4471 -3.9842 -1.4373 19 1 -0.4851 0.8400 0.0004 20 1 0.3555 -2.3881 0.0038 21 1 0.8498 -4.3533 1.6161 22 1 0.3308 -4.9202 0.0140 23 1 3.0266 -5.7790 1.0541 24 1 1.5624 -6.5700 1.6896 25 1 1.3450 -7.6248 -0.3843 26 1 4.0334 -5.1881 -0.6041 27 1 3.9886 -5.1593 -2.3868 28 1 1.5477 -4.2036 -2.0127 29 1 2.9531 -3.1248 -1.8773 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306572752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:42 Heat of formation + Delta-G solvation = -36.407984 kcal Electronic energy + Delta-G solvation = -12824.242530 eV Core-core repulsion = 10554.055360 eV Total energy + Delta-G solvation = -2270.187170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.88268 -36.83739 -34.59013 -32.54795 -30.98620 -29.37742 -25.58723 -23.88669 -22.81784 -20.07765 -19.34538 -17.32667 -16.98199 -16.38768 -14.96995 -14.50289 -13.89253 -13.80559 -13.45144 -13.32227 -12.55414 -12.25222 -12.01143 -11.61940 -11.13241 -10.93037 -10.78125 -10.46975 -10.24789 -9.91571 -9.72616 -9.53054 -8.96216 -8.92916 -7.01726 -5.80636 -3.10084 2.89619 3.40928 3.46681 3.48909 3.49609 4.54063 4.80610 4.99240 5.15603 5.26534 5.48836 5.55252 5.62707 5.78460 5.81481 6.05782 6.17623 6.36894 6.41559 6.55999 6.84288 6.95615 7.00358 7.43209 7.66522 8.37523 8.43795 9.49001 10.05554 10.40126 11.42007 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.062767 B = 0.008452 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.984794 B = 3312.023890 C = 3499.453231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.174 3.826 11 H 0.046 0.954 12 C -0.146 4.146 13 C 0.112 3.888 14 N -0.725 5.725 15 C 0.521 3.479 16 O -0.566 6.566 17 C -0.137 4.137 18 C -0.127 4.127 19 H 0.255 0.745 20 H 0.383 0.617 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.395 0.605 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -10.557 2.803 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.367 5.367 10 C 0.064 3.936 11 H 0.064 0.936 12 C -0.185 4.185 13 C -0.013 4.013 14 N -0.377 5.377 15 C 0.309 3.691 16 O -0.446 6.446 17 C -0.178 4.178 18 C -0.168 4.168 19 H 0.065 0.935 20 H 0.217 0.783 21 H 0.098 0.902 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.684 -10.549 2.307 11.770 hybrid contribution -0.176 0.744 0.023 0.765 sum 4.509 -9.805 2.331 11.040 Atomic orbital electron populations 1.69671 1.05158 1.25610 1.57626 1.24751 0.95494 0.97738 1.02905 0.86134 0.78806 0.84153 0.77196 1.20510 1.21874 1.21875 1.19291 0.91045 0.84073 1.42759 0.91028 1.42511 1.05819 0.99728 1.88687 1.19898 0.94631 0.86520 0.92522 0.93612 1.22118 0.99456 0.94552 1.02382 1.21779 1.01458 0.92250 0.85786 1.45986 1.50540 1.28682 1.12442 1.20761 0.79639 0.86444 0.82272 1.90704 1.65104 1.55738 1.33017 1.22032 0.98545 0.93079 1.04154 1.22060 0.98303 0.95354 1.01106 0.93526 0.78308 0.90186 0.91559 0.90520 0.89845 0.76971 0.89634 0.89255 0.92469 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 15 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 15 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 7 C -0.24 -6.45 9.76 -15.06 -0.15 -6.59 15 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 15 9 N -0.73 -17.42 5.05 -54.63 -0.28 -17.69 15 10 C 0.17 3.18 2.28 -69.16 -0.16 3.02 15 11 H 0.05 0.83 7.78 -51.93 -0.40 0.43 15 12 C -0.15 -2.14 5.14 -27.35 -0.14 -2.28 15 13 C 0.11 1.22 6.47 -3.67 -0.02 1.20 15 14 N -0.72 -9.05 5.27 -59.90 -0.32 -9.36 15 15 C 0.52 8.20 7.06 -11.26 -0.08 8.12 15 16 O -0.57 -11.03 17.92 5.55 0.10 -10.93 15 17 C -0.14 -2.00 5.59 -27.45 -0.15 -2.16 15 18 C -0.13 -2.24 5.17 -27.27 -0.14 -2.38 15 19 H 0.25 7.35 8.31 -40.82 -0.34 7.01 15 20 H 0.38 9.89 7.78 -40.82 -0.32 9.57 15 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.07 1.03 8.05 -51.93 -0.42 0.62 15 23 H 0.08 0.79 6.71 -51.93 -0.35 0.44 15 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.40 4.33 8.91 -40.82 -0.36 3.96 15 26 H 0.09 1.06 6.77 -51.93 -0.35 0.71 15 27 H 0.09 1.27 8.13 -51.93 -0.42 0.85 15 28 H 0.06 1.09 7.86 -51.93 -0.41 0.68 15 29 H 0.08 1.50 8.02 -51.93 -0.42 1.08 15 LS Contribution 241.55 15.07 3.64 3.64 Total: -1.00 -31.81 241.55 -5.93 -37.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.84 Total: 8.20 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.94 Total: -1.52 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.13 Total: -54.07 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.10 Total: -10.93 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.81 -5.93 -37.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.332 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds