Wall clock time and date at job start Thu Apr 9 2020 14:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.77788 * 2 1 4 4 C 1.54319 * 110.72117 * 236.76341 * 2 1 3 5 5 N 1.47019 * 107.27316 * 219.44318 * 4 2 1 6 6 C 1.36932 * 125.65082 * 178.89594 * 5 4 2 7 7 H 1.07998 * 120.00158 * 0.02562 * 6 5 4 8 8 C 1.38818 * 120.00097 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99737 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00139 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47320 * 90.00428 * 10 8 6 12 12 H 1.48500 * 109.47164 * 210.00380 * 10 8 6 13 13 H 1.48501 * 109.47302 * 330.00512 * 10 8 6 14 14 C 1.47469 * 108.71925 * 358.97399 * 5 4 2 15 15 C 1.54910 * 104.81410 * 24.07184 * 14 5 4 16 16 H 1.08998 * 111.00726 * 81.13549 * 15 14 5 17 17 C 1.50697 * 111.00404 * 204.95513 * 15 14 5 18 18 N 1.34784 * 119.99774 * 295.41214 * 17 15 14 19 19 O 1.21283 * 120.00521 * 115.14108 * 17 15 14 20 20 H 1.08998 * 109.46633 * 296.76121 * 1 2 3 21 21 H 1.09003 * 109.47200 * 56.76147 * 1 2 3 22 22 H 1.09000 * 109.46759 * 176.76283 * 1 2 3 23 23 H 1.09010 * 109.88079 * 338.85750 * 4 2 1 24 24 H 1.08995 * 109.88737 * 100.02190 * 4 2 1 25 25 H 0.97003 * 119.99805 * 179.97438 * 9 8 6 26 26 H 1.08996 * 110.34695 * 265.25085 * 14 5 4 27 27 H 1.09008 * 110.40539 * 142.91882 * 14 5 4 28 28 H 0.96999 * 120.00044 * 179.72920 * 18 17 15 29 29 H 0.97005 * 119.99846 * 359.72750 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0761 -0.7911 -1.2073 5 7 3.2445 -1.5506 -0.7391 6 6 4.0034 -2.3980 -1.5014 7 1 3.7599 -2.5523 -2.5422 8 6 5.0864 -3.0578 -0.9368 9 7 5.3834 -2.8694 0.3315 10 14 6.1220 -4.2132 -1.9769 11 1 7.2311 -3.4525 -2.6066 12 1 6.6832 -5.2853 -1.1163 13 1 5.2750 -4.8202 -3.0350 14 6 3.4632 -1.2506 0.6881 15 6 2.0790 -0.7954 1.2138 16 1 1.4448 -1.6531 1.4379 17 6 2.2256 0.0945 2.4211 18 7 2.7498 -0.3974 3.5612 19 8 1.8764 1.2546 2.3654 20 1 -0.3632 0.4627 0.9176 21 1 -0.3634 0.5633 -0.8596 22 1 -0.3633 -1.0260 -0.0580 23 1 1.3130 -1.4758 -1.5776 24 1 2.3741 -0.1024 -1.9977 25 1 6.1400 -3.3307 0.7262 26 1 4.1935 -0.4491 0.7993 27 1 3.7953 -2.1436 1.2177 28 1 2.8478 0.1764 4.3371 29 1 3.0291 -1.3253 3.6058 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306845669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:52 Heat of formation + Delta-G solvation = -48.689427 kcal Electronic energy + Delta-G solvation = -13052.104535 eV Core-core repulsion = 10781.384802 eV Total energy + Delta-G solvation = -2270.719733 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93427 -38.57124 -34.95904 -34.59608 -32.17024 -30.62828 -27.51275 -25.78903 -23.31644 -21.56744 -20.57954 -19.00943 -18.15496 -17.65294 -16.97023 -15.90940 -15.67085 -15.35939 -14.46512 -14.24351 -14.12382 -13.71328 -13.40847 -12.95380 -12.82489 -12.59479 -12.14234 -11.86762 -11.66910 -11.59379 -11.31005 -10.90684 -10.72098 -10.58688 -8.90844 -7.78918 -5.22387 1.50199 1.51456 1.60314 1.66190 2.50531 2.70859 3.33018 3.62509 3.73855 4.02197 4.11273 4.38818 4.53257 4.64222 4.69765 4.87970 5.07006 5.12326 5.28652 5.43185 5.50074 5.51509 5.72703 5.97328 6.26402 6.47192 7.09977 7.38760 7.75319 8.40442 9.24366 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.046116 B = 0.011224 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.014138 B = 2494.057197 C = 2987.063998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 H 0.064 0.936 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.242 4.242 7 H 0.082 0.918 8 C -0.064 4.064 9 N -0.947 5.947 10 Si 0.982 3.018 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.270 1.270 14 C 0.180 3.820 15 C -0.129 4.129 16 H 0.113 0.887 17 C 0.536 3.464 18 N -0.834 5.834 19 O -0.588 6.588 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.041 0.959 24 H 0.019 0.981 25 H 0.250 0.750 26 H -0.020 1.020 27 H 0.094 0.906 28 H 0.407 0.593 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 1.066 3.999 7.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.007 3.993 5 N -0.352 5.352 6 C -0.371 4.371 7 H 0.100 0.900 8 C -0.257 4.257 9 N -0.596 5.596 10 Si 0.811 3.189 11 H -0.218 1.218 12 H -0.216 1.216 13 H -0.195 1.195 14 C 0.055 3.945 15 C -0.151 4.151 16 H 0.131 0.869 17 C 0.322 3.678 18 N -0.397 5.397 19 O -0.468 6.468 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.037 0.963 25 H 0.060 0.940 26 H -0.002 1.002 27 H 0.111 0.889 28 H 0.239 0.761 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.853 1.615 3.787 7.995 hybrid contribution 1.117 -0.584 -0.129 1.267 sum -5.736 1.031 3.658 6.881 Atomic orbital electron populations 1.21638 0.92129 1.02309 1.02242 1.21949 0.97433 0.97859 0.92626 0.91724 1.21612 0.89131 0.93186 0.95326 1.44786 1.31956 1.50615 1.07883 1.19484 1.06925 1.17031 0.93617 0.90017 1.25604 0.99885 1.02353 0.97811 1.69929 1.30354 1.47157 1.12207 0.85018 0.78359 0.77981 0.77574 1.21806 1.21588 1.19474 1.21564 0.89293 0.98420 0.85266 1.22783 1.00935 0.98581 0.92813 0.86894 1.20437 0.75185 0.87290 0.84924 1.43677 1.64816 1.17235 1.13941 1.90643 1.52175 1.19330 1.84682 0.92479 0.91280 0.91741 0.94135 0.96261 0.94018 1.00207 0.88865 0.76090 0.75462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.16 71.98 0.66 -3.00 15 2 C -0.08 -2.96 2.65 -9.61 -0.03 -2.98 15 3 H 0.06 2.63 7.43 -2.38 -0.02 2.62 15 4 C 0.13 5.63 6.84 86.73 0.59 6.22 15 5 N -0.63 -32.30 3.40 -691.88 -2.35 -34.65 15 6 C -0.24 -13.41 10.27 84.04 0.86 -12.54 15 7 H 0.08 4.35 7.83 -2.91 -0.02 4.33 15 8 C -0.06 -3.52 5.49 84.86 0.47 -3.06 15 9 N -0.95 -53.81 10.09 21.65 0.22 -53.59 15 10 Si 0.98 44.50 29.55 68.60 2.03 46.53 15 11 H -0.29 -13.18 7.11 99.48 0.71 -12.48 15 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 14 C 0.18 8.65 5.34 86.85 0.46 9.11 15 15 C -0.13 -4.85 2.88 -10.15 -0.03 -4.88 15 16 H 0.11 3.85 8.05 -2.39 -0.02 3.83 15 17 C 0.54 19.04 7.42 87.65 0.65 19.69 15 18 N -0.83 -22.21 8.86 -173.52 -1.54 -23.74 15 19 O -0.59 -24.21 16.58 -3.04 -0.05 -24.26 15 20 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.06 1.73 8.06 -2.39 -0.02 1.71 15 23 H 0.04 1.62 7.77 -2.38 -0.02 1.60 15 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 25 H 0.25 13.73 8.31 -92.71 -0.77 12.96 15 26 H -0.02 -1.08 8.03 -2.39 -0.02 -1.10 15 27 H 0.09 4.81 5.88 -2.38 -0.01 4.79 15 28 H 0.41 8.96 8.93 -92.71 -0.83 8.13 15 29 H 0.41 9.75 8.83 -92.70 -0.82 8.93 15 Total: -1.00 -66.32 243.39 1.46 -64.86 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.49 Total: 16.30 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 3.64 Total: 8.56 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -3.67 Total: -111.98 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.32 1.46 -64.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306845669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.166 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds