Wall clock time and date at job start Thu Apr 9 2020 14:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.86562 * 2 1 4 4 C 1.54794 * 110.95202 * 123.76038 * 2 1 3 5 5 C 1.51811 * 102.23223 * 142.14129 * 4 2 1 6 6 O 1.21272 * 126.03578 * 165.17584 * 5 4 2 7 7 N 1.34591 * 107.92343 * 345.17988 * 5 4 2 8 8 N 1.36342 * 112.94804 * 358.40507 * 7 5 4 9 9 C 1.46896 * 110.99507 * 256.74136 * 8 7 5 10 10 C 1.52996 * 109.47256 * 294.93413 * 9 8 7 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.08998 * 109.47050 * 183.75066 * 1 2 3 20 20 H 1.08996 * 109.47323 * 303.74947 * 1 2 3 21 21 H 1.08999 * 109.47345 * 63.75228 * 1 2 3 22 22 H 1.08995 * 110.84982 * 260.33391 * 4 2 1 23 23 H 1.09000 * 110.84586 * 23.95734 * 4 2 1 24 24 H 0.97002 * 123.53103 * 178.40148 * 7 5 4 25 25 H 1.09004 * 109.46774 * 174.93612 * 9 8 7 26 26 H 1.09000 * 109.47723 * 54.94001 * 9 8 7 27 27 H 1.09004 * 109.47066 * 60.00378 * 10 9 8 28 28 H 1.08994 * 109.47405 * 300.00209 * 10 9 8 29 29 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0186 0.0000 4 6 2.0835 -0.8033 1.2018 5 6 3.2924 -1.4945 0.5973 6 8 4.1876 -2.0339 1.2125 7 7 3.1953 -1.4028 -0.7420 8 7 2.0596 -0.7686 -1.1504 9 6 1.0660 -1.7326 -1.6416 10 6 1.5992 -2.4171 -2.9018 11 6 0.5797 -3.4056 -3.4062 12 1 -0.3553 -3.5327 -2.8807 13 6 0.8378 -4.1434 -4.5421 14 7 1.9762 -3.9883 -5.1821 15 14 -0.4291 -5.3631 -5.1715 16 1 -1.3430 -4.6811 -6.1228 17 1 0.2612 -6.4811 -5.8635 18 1 -1.2129 -5.8970 -4.0287 19 1 -0.3633 -1.0255 0.0672 20 1 -0.3634 0.5709 0.8544 21 1 -0.3634 0.4545 -0.9217 22 1 2.3819 -0.1359 2.0102 23 1 1.3528 -1.5335 1.5499 24 1 3.8634 -1.7514 -1.3528 25 1 0.1385 -1.2105 -1.8765 26 1 0.8764 -2.4824 -0.8735 27 1 2.5268 -2.9392 -2.6669 28 1 1.7887 -1.6674 -3.6700 29 1 2.1580 -4.5076 -5.9811 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306846765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:55 Heat of formation + Delta-G solvation = -5.868876 kcal Electronic energy + Delta-G solvation = -12788.229298 eV Core-core repulsion = 10519.366403 eV Total energy + Delta-G solvation = -2268.862895 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83563 -37.27887 -33.55576 -32.93570 -31.33648 -28.32023 -27.06286 -24.54771 -21.69404 -21.01649 -19.64823 -17.35259 -16.39415 -16.09397 -15.28482 -14.64889 -14.45398 -14.13738 -13.57916 -13.02867 -12.53888 -12.38940 -12.24694 -11.57003 -11.34110 -11.20208 -10.96364 -10.66284 -10.33225 -9.91302 -9.60984 -9.30490 -9.23482 -8.42612 -7.85780 -6.07611 -4.11045 2.73670 3.27475 3.28416 3.34676 3.37410 4.26960 4.40178 4.65408 4.74184 4.90746 5.28895 5.31573 5.51973 5.63432 5.81711 5.93312 6.07306 6.16611 6.24991 6.69826 6.82008 7.30363 7.59092 7.68732 7.89574 7.98876 8.30544 8.58849 8.95088 9.53479 11.03708 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.008811 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.323323 B = 3176.988233 C = 3474.428447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 H 0.104 0.896 4 C -0.185 4.185 5 C 0.499 3.501 6 O -0.540 6.540 7 N -0.558 5.558 8 N -0.291 5.291 9 C 0.024 3.976 10 C 0.028 3.972 11 C -0.525 4.525 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.894 3.106 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.431 0.569 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.015 0.985 28 H 0.027 0.973 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 7.829 8.874 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.053 4.053 3 H 0.122 0.878 4 C -0.226 4.226 5 C 0.283 3.717 6 O -0.416 6.416 7 N -0.306 5.306 8 N -0.109 5.109 9 C -0.103 4.103 10 C -0.010 4.010 11 C -0.564 4.564 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.124 0.876 23 H 0.122 0.878 24 H 0.276 0.724 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.369 7.838 8.703 11.950 hybrid contribution -0.722 -1.421 -0.119 1.598 sum -3.091 6.417 8.584 11.154 Atomic orbital electron populations 1.22072 0.93005 1.03192 1.02928 1.23127 0.96209 0.98482 0.87445 0.87785 1.23043 0.98053 1.01522 1.00029 1.21457 0.87352 0.79365 0.83491 1.90727 1.38758 1.46101 1.66040 1.46024 1.19414 1.58619 1.06519 1.65216 0.99685 1.19327 1.26682 1.23264 0.94596 0.93192 0.99278 1.19069 0.96434 0.94911 0.90554 1.21115 1.02907 1.21987 1.10393 0.92684 1.24994 0.95471 0.97137 0.96623 1.69961 1.23101 1.41237 1.18725 0.86562 0.81394 0.80860 0.78999 1.20545 1.21168 1.19907 0.91459 0.91587 0.90759 0.87570 0.87779 0.72430 0.89649 0.95019 0.96701 0.95456 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 7.90 37.16 0.29 -1.38 15 2 C 0.06 0.70 4.13 -66.08 -0.27 0.43 15 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 4 C -0.18 -2.39 6.60 -26.39 -0.17 -2.56 15 5 C 0.50 8.64 8.63 -10.52 -0.09 8.55 15 6 O -0.54 -11.16 18.03 5.56 0.10 -11.05 15 7 N -0.56 -9.77 5.45 31.48 0.17 -9.60 15 8 N -0.29 -4.89 5.58 -104.86 -0.59 -5.48 15 9 C 0.02 0.46 3.83 -3.83 -0.01 0.44 15 10 C 0.03 0.69 5.04 -27.88 -0.14 0.55 15 11 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 15 12 H 0.05 1.45 7.74 -52.49 -0.41 1.05 15 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 14 N -0.89 -26.33 13.29 55.43 0.74 -25.59 15 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 19 H 0.07 0.80 6.66 -51.93 -0.35 0.45 15 20 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.07 0.82 7.57 -51.93 -0.39 0.43 15 22 H 0.11 1.13 8.14 -51.93 -0.42 0.70 15 23 H 0.10 1.28 7.86 -51.93 -0.41 0.87 15 24 H 0.43 7.65 8.46 -185.33 -1.57 6.09 15 25 H 0.09 1.55 6.15 -51.93 -0.32 1.23 15 26 H 0.03 0.63 7.85 -51.93 -0.41 0.22 15 27 H 0.01 0.39 7.38 -51.93 -0.38 0.01 15 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 244.44 15.07 3.68 3.68 Total: -1.00 -31.44 244.44 -6.78 -38.22 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.06 Total: 0.70 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.81 Total: -7.11 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.32 Total: -40.67 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.10 Total: -11.05 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.44 -6.78 -38.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306846765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.350 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds