Wall clock time and date at job start Thu Apr 9 2020 14:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.86562 * 2 1 4 4 C 1.54794 * 110.95202 * 123.76038 * 2 1 3 5 5 C 1.51811 * 102.23223 * 142.14129 * 4 2 1 6 6 O 1.21272 * 126.03578 * 165.17584 * 5 4 2 7 7 N 1.34591 * 107.92343 * 345.17988 * 5 4 2 8 8 N 1.36342 * 112.94804 * 358.40507 * 7 5 4 9 9 C 1.46896 * 110.99507 * 256.74136 * 8 7 5 10 10 C 1.52996 * 109.47256 * 294.93413 * 9 8 7 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.08998 * 109.47050 * 183.75066 * 1 2 3 20 20 H 1.08996 * 109.47323 * 303.74947 * 1 2 3 21 21 H 1.08999 * 109.47345 * 63.75228 * 1 2 3 22 22 H 1.08995 * 110.84982 * 260.33391 * 4 2 1 23 23 H 1.09000 * 110.84586 * 23.95734 * 4 2 1 24 24 H 0.97002 * 123.53103 * 178.40148 * 7 5 4 25 25 H 1.09004 * 109.46774 * 174.93612 * 9 8 7 26 26 H 1.09000 * 109.47723 * 54.94001 * 9 8 7 27 27 H 1.09004 * 109.47066 * 60.00378 * 10 9 8 28 28 H 1.08994 * 109.47405 * 300.00209 * 10 9 8 29 29 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0186 0.0000 4 6 2.0835 -0.8033 1.2018 5 6 3.2924 -1.4945 0.5973 6 8 4.1876 -2.0339 1.2125 7 7 3.1953 -1.4028 -0.7420 8 7 2.0596 -0.7686 -1.1504 9 6 1.0660 -1.7326 -1.6416 10 6 1.5992 -2.4171 -2.9018 11 6 0.5797 -3.4056 -3.4062 12 1 -0.3553 -3.5327 -2.8807 13 6 0.8378 -4.1434 -4.5421 14 7 1.9762 -3.9883 -5.1821 15 14 -0.4291 -5.3631 -5.1715 16 1 -1.3430 -4.6811 -6.1228 17 1 0.2612 -6.4811 -5.8635 18 1 -1.2129 -5.8970 -4.0287 19 1 -0.3633 -1.0255 0.0672 20 1 -0.3634 0.5709 0.8544 21 1 -0.3634 0.4545 -0.9217 22 1 2.3819 -0.1359 2.0102 23 1 1.3528 -1.5335 1.5499 24 1 3.8634 -1.7514 -1.3528 25 1 0.1385 -1.2105 -1.8765 26 1 0.8764 -2.4824 -0.8735 27 1 2.5268 -2.9392 -2.6669 28 1 1.7887 -1.6674 -3.6700 29 1 2.1580 -4.5076 -5.9811 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306846765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:55 Heat of formation + Delta-G solvation = -28.926104 kcal Electronic energy + Delta-G solvation = -12789.229134 eV Core-core repulsion = 10519.366403 eV Total energy + Delta-G solvation = -2269.862731 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.14453 -38.72203 -35.53713 -34.08207 -33.10135 -29.90632 -28.17643 -26.36106 -23.37416 -22.23279 -21.01010 -18.92109 -18.23278 -17.48569 -16.68898 -16.44023 -15.89841 -15.44637 -15.02714 -14.53351 -14.19989 -13.63180 -13.52409 -12.99292 -12.90008 -12.59528 -12.49735 -12.24719 -11.97280 -11.52571 -11.32066 -11.26014 -10.74871 -10.56447 -9.23991 -8.21672 -6.32907 1.37793 1.40971 1.41969 1.52520 1.95003 2.40205 3.12457 3.13553 3.46016 3.66462 3.92750 4.36093 4.42283 4.55186 4.64665 4.74726 4.89307 5.00623 5.14134 5.26307 5.41111 5.51186 5.64600 5.78949 6.01096 6.19768 6.62091 6.84093 7.18960 7.36775 8.90268 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.008811 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.323323 B = 3176.988233 C = 3474.428447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 H 0.128 0.872 4 C -0.172 4.172 5 C 0.489 3.511 6 O -0.581 6.581 7 N -0.566 5.566 8 N -0.300 5.300 9 C 0.042 3.958 10 C 0.032 3.968 11 C -0.543 4.543 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.286 1.286 18 H -0.263 1.263 19 H 0.056 0.944 20 H 0.100 0.900 21 H 0.072 0.928 22 H 0.138 0.862 23 H 0.115 0.885 24 H 0.422 0.578 25 H 0.102 0.898 26 H 0.028 0.972 27 H -0.013 1.013 28 H 0.000 1.000 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 8.574 9.970 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.049 4.049 3 H 0.146 0.854 4 C -0.212 4.212 5 C 0.276 3.724 6 O -0.460 6.460 7 N -0.310 5.310 8 N -0.118 5.118 9 C -0.085 4.085 10 C -0.005 4.005 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.790 3.210 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.187 1.187 19 H 0.075 0.925 20 H 0.119 0.881 21 H 0.091 0.909 22 H 0.156 0.844 23 H 0.133 0.867 24 H 0.265 0.735 25 H 0.121 0.879 26 H 0.046 0.954 27 H 0.006 0.994 28 H 0.018 0.982 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.346 8.610 9.812 13.759 hybrid contribution -0.067 -1.602 -0.453 1.666 sum -4.413 7.008 9.359 12.497 Atomic orbital electron populations 1.22084 0.91184 1.03190 1.04477 1.23407 0.97650 0.98632 0.85248 0.85445 1.23109 0.95745 1.01764 1.00631 1.22243 0.88073 0.78787 0.83327 1.90697 1.40677 1.47909 1.66693 1.46200 1.19454 1.58518 1.06876 1.65197 0.98953 1.18179 1.29521 1.22916 0.95445 0.93572 0.96614 1.18917 0.95113 0.94032 0.92461 1.21606 1.03637 1.22363 1.10592 0.91782 1.25953 0.97509 0.99215 0.97004 1.70102 1.25229 1.42515 1.19312 0.85443 0.78756 0.78179 0.78644 1.19465 1.21179 1.18743 0.92497 0.88133 0.90895 0.84432 0.86661 0.73467 0.87948 0.95376 0.99440 0.98176 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.90 71.98 0.57 -2.15 15 2 C 0.06 1.27 4.13 45.29 0.19 1.46 15 3 H 0.13 2.31 8.14 -2.38 -0.02 2.29 15 4 C -0.17 -3.90 6.60 30.82 0.20 -3.70 15 5 C 0.49 16.59 8.63 88.04 0.76 17.35 15 6 O -0.58 -24.08 18.03 -3.01 -0.05 -24.14 15 7 N -0.57 -19.87 5.45 -172.82 -0.94 -20.81 15 8 N -0.30 -9.76 5.58 -485.66 -2.71 -12.48 15 9 C 0.04 1.60 3.83 86.30 0.33 1.93 15 10 C 0.03 1.64 5.04 29.85 0.15 1.79 15 11 C -0.54 -29.95 9.11 25.60 0.23 -29.71 15 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 15 13 C 0.00 0.07 5.46 84.66 0.46 0.54 15 14 N -0.93 -56.19 13.29 21.45 0.28 -55.90 15 15 Si 0.97 43.47 29.54 68.60 2.03 45.49 15 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 17 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 19 H 0.06 1.16 6.66 -2.39 -0.02 1.14 15 20 H 0.10 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.07 1.36 7.57 -2.39 -0.02 1.35 15 22 H 0.14 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.12 2.44 7.86 -2.39 -0.02 2.42 15 24 H 0.42 15.70 8.46 -215.65 -1.82 13.88 15 25 H 0.10 3.54 6.15 -2.38 -0.01 3.53 15 26 H 0.03 1.08 7.85 -2.39 -0.02 1.07 15 27 H -0.01 -0.71 7.38 -2.38 -0.02 -0.73 15 28 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 29 H 0.26 14.97 8.31 -92.70 -0.77 14.19 15 Total: -1.00 -68.86 244.44 0.82 -68.04 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -0.68 Total: 12.29 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 2.90 Total: -12.49 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -3.37 Total: -89.19 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.86 0.82 -68.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306846765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.118 kcal (2) G-P(sol) polarization free energy of solvation -68.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds