Wall clock time and date at job start Thu Apr 9 2020 14:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.13146 * 2 1 4 4 N 1.45751 * 109.29868 * 240.51552 * 2 1 3 5 5 C 1.33355 * 124.10858 * 220.60848 * 4 2 1 6 6 O 1.21277 * 118.24924 * 182.20397 * 5 4 2 7 7 C 1.50175 * 123.50504 * 2.22862 * 5 4 2 8 8 C 1.53066 * 109.89698 * 342.41802 * 7 5 4 9 9 C 1.52919 * 109.30070 * 119.48419 * 2 1 3 10 10 H 1.09003 * 109.73923 * 290.89888 * 9 2 1 11 11 N 1.46499 * 109.60585 * 51.30722 * 9 2 1 12 12 C 1.36935 * 119.99938 * 204.18597 * 11 9 2 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 9 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99869 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47361 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46860 * 120.00310 * 16 14 12 19 19 H 1.48500 * 109.47264 * 240.00123 * 16 14 12 20 20 H 1.09000 * 109.47507 * 300.51606 * 1 2 3 21 21 H 1.09002 * 109.47490 * 60.51825 * 1 2 3 22 22 H 1.09000 * 109.47467 * 180.51916 * 1 2 3 23 23 H 0.96998 * 117.94737 * 40.61976 * 4 2 1 24 24 H 1.08999 * 109.40001 * 222.28150 * 7 5 4 25 25 H 1.09003 * 109.32964 * 102.50304 * 7 5 4 26 26 H 1.09005 * 109.66909 * 289.16583 * 8 7 5 27 27 H 1.08995 * 109.70678 * 168.65108 * 8 7 5 28 28 H 0.96999 * 119.99984 * 24.18532 * 11 9 2 29 29 H 0.96996 * 119.99743 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0116 -0.6771 -1.1975 5 6 3.0499 -1.5137 -1.2170 6 8 3.3853 -1.9876 -2.2817 7 6 3.8258 -1.9007 0.0092 8 6 3.5521 -0.9014 1.1359 9 6 2.0354 -0.7103 1.2563 10 1 1.8117 -0.1065 2.1358 11 7 1.3836 -2.0167 1.3783 12 6 1.2721 -2.6143 2.6053 13 1 1.6685 -2.1247 3.4825 14 6 0.6541 -3.8519 2.7209 15 7 0.1757 -4.4511 1.6511 16 14 0.5026 -4.6675 4.3946 17 1 1.1161 -3.7950 5.4278 18 1 -0.9322 -4.8788 4.7142 19 1 1.2028 -5.9769 4.3724 20 1 -0.3634 0.5218 0.8853 21 1 -0.3634 0.5058 -0.8946 22 1 -0.3634 -1.0276 0.0093 23 1 1.5480 -0.5084 -2.0326 24 1 4.8910 -1.9030 -0.2221 25 1 3.5226 -2.8980 0.3282 26 1 4.0248 0.0528 0.9028 27 1 3.9491 -1.2879 2.0745 28 1 1.0311 -2.4583 0.5899 29 1 -0.2558 -5.3160 1.7319 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306996732.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:07 Heat of formation + Delta-G solvation = -57.056820 kcal Electronic energy + Delta-G solvation = -13216.901734 eV Core-core repulsion = 10945.819163 eV Total energy + Delta-G solvation = -2271.082571 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34339 -38.37610 -35.51961 -33.91698 -32.49174 -30.77421 -27.64497 -25.66106 -23.74575 -22.71337 -19.66099 -19.32177 -17.93020 -17.04484 -16.42831 -16.34550 -15.66927 -15.32282 -14.99838 -14.39272 -14.05246 -13.59142 -13.27367 -12.91626 -12.90021 -12.55397 -12.22868 -12.04988 -11.97548 -11.70207 -11.58616 -10.94052 -10.66750 -9.99920 -8.96560 -7.90004 -5.17538 1.49657 1.50789 1.59721 1.69356 2.43914 2.59718 3.44692 3.75238 3.86777 3.92324 4.04928 4.33601 4.47896 4.50763 4.67174 4.98550 5.00203 5.01252 5.16935 5.24968 5.37227 5.51972 5.60105 5.92177 6.30874 6.42466 7.28362 7.38309 8.13321 8.34995 9.33507 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.041561 B = 0.011609 C = 0.010997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.554715 B = 2411.259626 C = 2545.562784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.113 0.887 4 N -0.701 5.701 5 C 0.524 3.476 6 O -0.619 6.619 7 C -0.121 4.121 8 C -0.132 4.132 9 C 0.151 3.849 10 H 0.082 0.918 11 N -0.727 5.727 12 C -0.225 4.225 13 H 0.084 0.916 14 C -0.078 4.078 15 N -0.973 5.973 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.299 1.299 19 H -0.302 1.302 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.398 0.602 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.371 0.629 29 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 11.872 -0.255 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.030 3.970 3 H 0.131 0.869 4 N -0.351 5.351 5 C 0.313 3.687 6 O -0.503 6.503 7 C -0.161 4.161 8 C -0.172 4.172 9 C 0.042 3.958 10 H 0.099 0.901 11 N -0.367 5.367 12 C -0.357 4.357 13 H 0.102 0.898 14 C -0.270 4.270 15 N -0.624 5.624 16 Si 0.797 3.203 17 H -0.186 1.186 18 H -0.227 1.227 19 H -0.230 1.230 20 H 0.097 0.903 21 H 0.093 0.907 22 H 0.054 0.946 23 H 0.234 0.766 24 H 0.118 0.882 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.203 0.797 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.684 11.613 -0.344 12.188 hybrid contribution -0.652 -1.244 0.170 1.414 sum 3.032 10.369 -0.174 10.805 Atomic orbital electron populations 1.21997 0.93877 1.01947 1.03080 1.21490 0.95233 0.96648 0.83667 0.86908 1.45549 1.31166 1.45612 1.12765 1.20507 0.80573 0.77005 0.90624 1.90658 1.70022 1.56040 1.33545 1.21384 1.00141 1.01732 0.92872 1.22249 0.98699 0.98670 0.97555 1.20934 0.91329 0.87286 0.96250 0.90054 1.42587 1.68674 1.18970 1.06460 1.19676 1.28660 0.99708 0.87656 0.89804 1.25480 1.02603 0.99070 0.99876 1.69835 1.46312 1.17073 1.29186 0.85167 0.76545 0.78079 0.80533 1.18561 1.22715 1.23042 0.90294 0.90715 0.94562 0.76610 0.88150 0.90632 0.89177 0.91383 0.79661 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.14 71.98 0.66 -3.43 15 2 C 0.13 3.57 3.35 45.10 0.15 3.73 15 3 H 0.11 2.16 8.14 -2.39 -0.02 2.15 15 4 N -0.70 -21.63 5.02 -446.66 -2.24 -23.88 15 5 C 0.52 19.80 7.51 87.71 0.66 20.45 15 6 O -0.62 -27.96 17.78 -3.02 -0.05 -28.01 15 7 C -0.12 -4.28 5.60 29.71 0.17 -4.11 15 8 C -0.13 -3.92 5.80 30.73 0.18 -3.75 15 9 C 0.15 4.95 2.69 45.08 0.12 5.07 15 10 H 0.08 2.49 8.09 -2.39 -0.02 2.47 15 11 N -0.73 -32.81 3.35 -322.51 -1.08 -33.89 15 12 C -0.23 -11.46 9.93 84.04 0.83 -10.62 15 13 H 0.08 4.01 7.83 -2.91 -0.02 3.99 15 14 C -0.08 -4.33 5.50 84.86 0.47 -3.86 15 15 N -0.97 -58.80 13.06 21.65 0.28 -58.52 15 16 Si 0.97 44.95 29.55 68.60 2.03 46.98 15 17 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 18 H -0.30 -14.14 7.11 99.48 0.71 -13.43 15 19 H -0.30 -14.45 7.11 99.48 0.71 -13.75 15 20 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.07 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.04 1.30 6.90 -2.39 -0.02 1.28 15 23 H 0.40 11.24 8.66 -92.71 -0.80 10.44 15 24 H 0.10 3.12 8.14 -2.39 -0.02 3.10 15 25 H 0.08 3.25 7.78 -2.39 -0.02 3.23 15 26 H 0.09 2.06 8.13 -2.38 -0.02 2.04 15 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.37 19.01 6.81 -92.71 -0.63 18.38 15 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 15 Total: -1.00 -66.77 242.81 1.89 -64.88 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.28 Total: 28.96 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 3.24 Total: 3.48 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.04 Total: -116.28 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.05 Total: -28.01 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.77 1.89 -64.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306996732.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.826 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds