Wall clock time and date at job start Thu Apr 9 2020 14:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.12199 * 2 1 4 4 N 1.45755 * 109.29777 * 119.47886 * 2 1 3 5 5 C 1.33356 * 124.10311 * 139.67596 * 4 2 1 6 6 O 1.21280 * 118.24518 * 177.49459 * 5 4 2 7 7 C 1.50192 * 123.49312 * 357.20960 * 5 4 2 8 8 C 1.53074 * 109.83408 * 18.07419 * 7 5 4 9 9 C 1.52918 * 109.29999 * 240.51886 * 2 1 3 10 10 H 1.09000 * 109.60199 * 308.84718 * 9 2 1 11 11 N 1.46495 * 109.60467 * 69.17577 * 9 2 1 12 12 C 1.36935 * 119.99836 * 204.99654 * 11 9 2 13 13 H 1.08000 * 120.00227 * 0.02562 * 12 11 9 14 14 C 1.38818 * 120.00058 * 179.97438 * 12 11 9 15 15 N 1.31621 * 119.99772 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00147 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47111 * 89.99853 * 16 14 12 18 18 H 1.48499 * 109.47329 * 210.00264 * 16 14 12 19 19 H 1.48510 * 109.46983 * 329.99925 * 16 14 12 20 20 H 1.09002 * 109.47146 * 300.51705 * 1 2 3 21 21 H 1.08997 * 109.47257 * 60.52227 * 1 2 3 22 22 H 1.09002 * 109.46792 * 180.52167 * 1 2 3 23 23 H 0.97001 * 117.94686 * 319.38354 * 4 2 1 24 24 H 1.09003 * 109.60092 * 257.85826 * 7 5 4 25 25 H 1.08997 * 109.19142 * 138.03411 * 7 5 4 26 26 H 1.08994 * 109.67472 * 191.15375 * 8 7 5 27 27 H 1.09000 * 109.70191 * 70.63721 * 8 7 5 28 28 H 0.96996 * 119.99991 * 25.00205 * 11 9 2 29 29 H 0.97001 * 119.99772 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8872 1.0299 0.0000 4 7 2.0118 -0.6770 1.1976 5 6 3.0534 -1.5094 1.2181 6 8 3.3917 -1.9793 2.2837 7 6 3.8260 -1.9007 -0.0091 8 6 3.5522 -0.9012 -1.1358 9 6 2.0355 -0.7103 -1.2564 10 1 1.5485 -1.6811 -1.3486 11 7 1.7349 0.1045 -2.4362 12 6 1.6080 -0.4889 -3.6637 13 1 1.7291 -1.5576 -3.7621 14 6 1.3227 0.2831 -4.7816 15 7 1.1746 1.5854 -4.6617 16 14 1.1489 -0.5264 -6.4561 17 1 -0.2672 -0.9177 -6.6721 18 1 1.5653 0.4293 -7.5136 19 1 2.0106 -1.7346 -6.5137 20 1 -0.3633 0.5218 0.8853 21 1 -0.3633 0.5057 -0.8946 22 1 -0.3633 -1.0277 0.0094 23 1 1.5481 -0.5083 2.0327 24 1 3.5241 -2.8981 -0.3286 25 1 4.8909 -1.9017 0.2232 26 1 3.9491 -1.2884 -2.0741 27 1 4.0249 0.0530 -0.9034 28 1 1.6259 1.0642 -2.3478 29 1 0.9748 2.1248 -5.4428 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306996739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:12 Heat of formation + Delta-G solvation = -38.206282 kcal Electronic energy + Delta-G solvation = -12885.307101 eV Core-core repulsion = 10615.041951 eV Total energy + Delta-G solvation = -2270.265150 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.99386 -36.94333 -34.06923 -32.54771 -31.16990 -29.23188 -26.00932 -23.56788 -22.48492 -21.37196 -18.91884 -17.28592 -16.68403 -15.66901 -15.15561 -14.55914 -14.15650 -13.82297 -13.43879 -13.06426 -12.50062 -12.24216 -11.86582 -11.61054 -11.13698 -10.98240 -10.86761 -10.69356 -10.41334 -10.12183 -9.80292 -9.40442 -9.00404 -8.79522 -7.10143 -5.87369 -3.17644 2.91915 3.37843 3.43422 3.45028 3.57957 4.49398 4.91132 5.09355 5.19230 5.32126 5.51179 5.57758 5.64197 5.77757 6.01600 6.12026 6.14319 6.28955 6.34759 6.54377 6.67318 6.86861 7.05188 7.58918 7.64382 8.29852 8.47996 9.42122 9.94744 10.30323 11.34811 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.056438 B = 0.009241 C = 0.008450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.000561 B = 3029.235466 C = 3312.682590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.073 0.927 4 N -0.710 5.710 5 C 0.522 3.478 6 O -0.577 6.577 7 C -0.134 4.134 8 C -0.144 4.144 9 C 0.171 3.829 10 H 0.058 0.942 11 N -0.716 5.716 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.931 5.931 16 Si 0.908 3.092 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 H 0.049 0.951 21 H 0.086 0.914 22 H 0.056 0.944 23 H 0.393 0.607 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.385 0.615 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -2.985 7.233 7.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.091 0.909 4 N -0.361 5.361 5 C 0.310 3.690 6 O -0.458 6.458 7 C -0.174 4.174 8 C -0.185 4.185 9 C 0.060 3.940 10 H 0.076 0.924 11 N -0.357 5.357 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 H 0.068 0.932 21 H 0.105 0.895 22 H 0.075 0.925 23 H 0.228 0.772 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.219 0.781 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.947 -3.358 7.370 8.155 hybrid contribution -0.341 0.101 -0.715 0.799 sum 0.606 -3.257 6.655 7.434 Atomic orbital electron populations 1.22083 0.94078 1.02472 1.02750 1.21329 0.95006 0.96451 0.85079 0.90930 1.45663 1.31910 1.46468 1.12102 1.20349 0.80041 0.77572 0.91046 1.90698 1.68164 1.54954 1.31992 1.21638 1.00588 1.01677 0.93502 1.22479 1.00370 0.98116 0.97542 1.20441 0.92316 0.95085 0.86116 0.92428 1.42265 1.84653 1.06594 1.02204 1.19200 1.41122 0.92388 0.84711 0.91001 1.24742 1.02275 0.95497 0.98013 1.69655 1.54936 1.03850 1.29393 0.86189 0.77787 0.78154 0.84028 1.21651 1.21750 1.20681 0.93192 0.89549 0.92462 0.77240 0.88618 0.89012 0.90256 0.92070 0.78058 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.32 37.16 0.35 -1.89 15 2 C 0.13 1.94 3.19 -68.37 -0.22 1.72 15 3 H 0.07 1.12 8.13 -51.93 -0.42 0.70 15 4 N -0.71 -10.37 5.12 -54.84 -0.28 -10.65 15 5 C 0.52 8.57 7.71 -11.86 -0.09 8.48 15 6 O -0.58 -11.22 17.78 5.56 0.10 -11.12 15 7 C -0.13 -1.98 6.04 -28.09 -0.17 -2.14 15 8 C -0.14 -2.40 5.63 -26.51 -0.15 -2.55 15 9 C 0.17 3.11 2.20 -67.80 -0.15 2.96 15 10 H 0.06 1.09 8.05 -51.93 -0.42 0.67 15 11 N -0.72 -16.26 4.74 -53.29 -0.25 -16.51 15 12 C -0.24 -6.27 9.94 -15.06 -0.15 -6.42 15 13 H 0.07 1.81 7.83 -52.49 -0.41 1.40 15 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 15 15 N -0.93 -26.60 13.06 55.49 0.72 -25.87 15 16 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 15 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.09 1.43 7.86 -51.93 -0.41 1.02 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.39 5.13 8.66 -40.82 -0.35 4.77 15 24 H 0.10 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.09 1.25 8.14 -51.93 -0.42 0.82 15 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 27 H 0.06 1.02 8.13 -51.93 -0.42 0.60 15 28 H 0.39 9.31 7.79 -40.82 -0.32 8.99 15 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 246.58 15.07 3.72 3.72 Total: -1.00 -29.38 246.58 -5.70 -35.08 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.00 Total: 9.17 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.68 Total: -0.17 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.19 Total: -53.03 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.10 Total: -11.12 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.38 -5.70 -35.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306996739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.128 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds