Wall clock time and date at job start Thu Apr 9 2020 14:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 110.99880 * 2 1 4 4 H 1.08996 * 109.54903 * 35.17656 * 3 2 1 5 5 C 1.53180 * 109.54283 * 274.99682 * 3 2 1 6 6 C 1.53093 * 109.16207 * 183.06494 * 5 3 2 7 7 O 1.42905 * 109.41479 * 57.61537 * 6 5 3 8 8 C 1.42905 * 114.09321 * 298.83564 * 7 6 5 9 9 C 1.53096 * 109.41404 * 61.16204 * 8 7 6 10 10 H 1.09004 * 109.52122 * 182.48273 * 9 8 7 11 11 O 1.42901 * 109.52290 * 62.29408 * 9 8 7 12 12 C 1.34929 * 116.99681 * 89.99938 * 11 9 8 13 13 H 1.07999 * 120.00281 * 0.02562 * 12 11 9 14 14 C 1.38641 * 119.99866 * 179.97438 * 12 11 9 15 15 N 1.31585 * 119.99547 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 119.99973 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46849 * 90.00594 * 16 14 12 18 18 H 1.48501 * 109.46969 * 209.99986 * 16 14 12 19 19 H 1.48492 * 109.47580 * 330.00172 * 16 14 12 20 20 H 1.08994 * 109.47369 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47231 * 300.00353 * 1 2 3 22 22 H 1.08999 * 109.46999 * 60.00202 * 1 2 3 23 23 H 1.00893 * 110.99574 * 236.03990 * 2 1 3 24 24 H 1.08996 * 109.51881 * 63.16015 * 5 3 2 25 25 H 1.09001 * 109.57559 * 303.00365 * 5 3 2 26 26 H 1.09000 * 109.48469 * 297.62848 * 6 5 3 27 27 H 1.09009 * 109.48868 * 177.59383 * 6 5 3 28 28 H 1.09005 * 109.48139 * 181.14239 * 8 7 6 29 29 H 1.09001 * 109.48271 * 301.17775 * 8 7 6 30 30 H 0.97007 * 119.99439 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3423 2.0127 0.5917 5 6 2.0616 1.8948 -1.4381 6 6 2.6822 3.2943 -1.4354 7 8 3.9782 3.2381 -0.8359 8 6 3.9732 2.8007 0.5246 9 6 3.4045 1.3813 0.6006 10 1 3.3588 1.0625 1.6420 11 8 4.2441 0.4903 -0.1364 12 6 5.2534 -0.0988 0.5380 13 1 5.3969 0.1116 1.5875 14 6 6.1058 -0.9750 -0.1162 15 7 5.9306 -1.2317 -1.3948 16 14 7.5036 -1.7899 0.8172 17 1 7.0306 -3.0734 1.3953 18 1 8.6325 -2.0516 -0.1114 19 1 7.9588 -0.8929 1.9095 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8305 -0.5262 -0.7813 24 1 1.0556 1.9432 -1.8547 25 1 2.6743 1.2258 -2.0424 26 1 2.0472 3.9725 -0.8654 27 1 2.7712 3.6546 -2.4603 28 1 4.9923 2.8052 0.9116 29 1 3.3550 3.4724 1.1201 30 1 6.5268 -1.8450 -1.8524 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642856310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:04 Heat of formation + Delta-G solvation = -75.996370 kcal Electronic energy + Delta-G solvation = -13811.497153 eV Core-core repulsion = 11414.563161 eV Total energy + Delta-G solvation = -2396.933992 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.06045 -35.78066 -35.21020 -31.64984 -30.70477 -29.30892 -25.34218 -24.43060 -22.70850 -22.39482 -19.50338 -17.46836 -16.04944 -15.48204 -15.03376 -14.79422 -14.32907 -14.01252 -13.88818 -13.34770 -12.66889 -12.31775 -12.01745 -11.60945 -11.34518 -11.20383 -11.02457 -10.72330 -10.46974 -10.33839 -9.94619 -9.76920 -9.04116 -8.76802 -7.85716 -7.75420 -5.83707 -3.44229 3.38030 3.40648 3.44059 4.37044 4.49224 4.74703 5.22734 5.36662 5.47149 5.48724 5.57078 5.63324 5.67597 5.79134 5.82138 6.07063 6.08291 6.13262 6.20836 6.45300 6.54491 6.74997 6.94209 7.55055 7.57252 7.84595 7.95094 8.54016 9.60336 10.28844 11.37468 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.036212 B = 0.011811 C = 0.010194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.044933 B = 2370.064653 C = 2745.919974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.678 5.678 3 C 0.096 3.904 4 H 0.070 0.930 5 C -0.180 4.180 6 C 0.070 3.930 7 O -0.368 6.368 8 C 0.042 3.958 9 C 0.074 3.926 10 H 0.052 0.948 11 O -0.266 6.266 12 C -0.351 4.351 13 H 0.059 0.941 14 C 0.023 3.977 15 N -0.889 5.889 16 Si 0.921 3.079 17 H -0.283 1.283 18 H -0.285 1.285 19 H -0.277 1.277 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.014 0.986 23 H 0.357 0.643 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 6.046 2.129 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.309 5.309 3 C -0.014 4.014 4 H 0.088 0.912 5 C -0.219 4.219 6 C -0.008 4.008 7 O -0.286 6.286 8 C -0.036 4.036 9 C 0.014 3.986 10 H 0.070 0.930 11 O -0.180 6.180 12 C -0.430 4.430 13 H 0.077 0.923 14 C -0.175 4.175 15 N -0.533 5.533 16 Si 0.749 3.251 17 H -0.209 1.209 18 H -0.211 1.211 19 H -0.202 1.202 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.032 0.968 23 H 0.177 0.823 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.390 5.867 2.396 10.514 hybrid contribution 0.239 -0.192 -0.056 0.312 sum -8.151 5.675 2.340 10.204 Atomic orbital electron populations 1.22205 0.89386 1.01208 0.99362 1.60345 1.05684 1.13262 1.51609 1.21648 0.95561 0.89460 0.94751 0.91174 1.22833 1.00463 0.99218 0.99427 1.22368 0.85323 0.95115 0.98004 1.87966 1.27249 1.86909 1.26494 1.23251 1.02240 0.95329 0.82737 1.22382 0.89842 0.90528 0.95897 0.92988 1.85701 1.41091 1.57015 1.34173 1.20833 1.06146 1.23056 0.92983 0.92309 1.24853 0.98532 0.98253 0.95832 1.70014 1.38407 1.36513 1.08376 0.86031 0.81068 0.79446 0.78588 1.20924 1.21123 1.20226 0.91903 0.92507 0.96781 0.82292 0.92572 0.89181 0.94496 0.89719 0.88725 0.94607 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.50 60.07 0.63 1.04 16 2 N -0.68 -12.65 6.44 -113.82 -0.73 -13.38 16 3 C 0.10 1.78 2.33 -67.53 -0.16 1.62 16 4 H 0.07 1.14 7.81 -51.93 -0.41 0.74 16 5 C -0.18 -3.17 5.23 -26.59 -0.14 -3.31 16 6 C 0.07 1.17 6.84 37.21 0.25 1.43 16 7 O -0.37 -7.74 10.70 -42.72 -0.46 -8.19 16 8 C 0.04 0.84 6.49 37.21 0.24 1.08 16 9 C 0.07 1.63 2.68 -26.59 -0.07 1.56 16 10 H 0.05 1.16 7.81 -51.93 -0.41 0.75 16 11 O -0.27 -7.40 8.63 -24.00 -0.21 -7.61 16 12 C -0.35 -10.27 9.78 30.88 0.30 -9.97 16 13 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 14 C 0.02 0.68 5.49 -17.51 -0.10 0.58 16 15 N -0.89 -28.02 13.68 55.48 0.76 -27.26 16 16 Si 0.92 22.53 29.55 -169.99 -5.02 17.50 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.74 8.06 -51.93 -0.42 0.33 16 22 H 0.01 0.18 7.51 -51.93 -0.39 -0.21 16 23 H 0.36 7.29 8.50 -39.30 -0.33 6.96 16 24 H 0.06 0.83 7.54 -51.93 -0.39 0.44 16 25 H 0.09 1.92 7.78 -51.93 -0.40 1.51 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 28 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -32.83 251.32 -5.31 -38.13 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.40 Total: 3.00 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.96 Total: -5.98 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.03 Total: -40.64 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.66 Total: -15.80 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.83 -5.31 -38.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642856310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.864 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds