Wall clock time and date at job start Thu Apr 9 2020 14:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30062 * 124.91056 * 2 1 4 4 C 1.35944 * 109.54210 * 179.97438 * 3 2 1 5 5 C 1.39147 * 133.45138 * 179.97438 * 4 3 2 6 6 C 1.40324 * 119.41861 * 179.74643 * 5 4 3 7 7 C 1.41316 * 120.01039 * 180.25561 * 6 5 4 8 8 H 1.08004 * 120.00471 * 330.32826 * 7 6 5 9 9 C 1.39880 * 119.99792 * 150.32816 * 7 6 5 10 10 N 1.30881 * 120.00053 * 161.73356 * 9 7 6 11 11 Si 1.86797 * 119.99989 * 341.72830 * 9 7 6 12 12 H 1.48498 * 109.47178 * 95.42282 * 11 9 7 13 13 H 1.48503 * 109.47274 * 215.42661 * 11 9 7 14 14 H 1.48501 * 109.47009 * 335.42308 * 11 9 7 15 15 C 1.41122 * 119.97300 * 0.51794 * 6 5 4 16 16 C 1.36110 * 120.36917 * 359.48021 * 15 6 5 17 17 C 1.39407 * 120.28130 * 0.25967 * 16 15 6 18 18 N 1.36110 * 124.91789 * 179.97438 * 2 1 3 19 19 H 0.97004 * 126.28227 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.47139 * 89.96996 * 1 2 3 21 21 H 1.08999 * 109.47365 * 209.97367 * 1 2 3 22 22 H 1.09001 * 109.47445 * 329.97536 * 1 2 3 23 23 H 1.07994 * 120.28902 * 0.02562 * 5 4 3 24 24 H 0.97005 * 119.99944 * 179.97438 * 10 9 7 25 25 H 1.08005 * 119.81638 * 179.76639 * 15 6 5 26 26 H 1.07996 * 119.85835 * 180.23954 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2513 1.0666 0.0000 4 6 3.5622 0.7063 0.0006 5 6 4.7526 1.4267 0.0004 6 6 5.9751 0.7378 0.0066 7 6 7.1916 1.4569 0.0119 8 1 7.2452 2.4311 -0.4514 9 6 8.3264 0.9071 0.6173 10 7 9.5140 1.3750 0.3281 11 14 8.1468 -0.4949 1.8386 12 1 8.3397 -1.7897 1.1376 13 1 9.1678 -0.3539 2.9077 14 1 6.7902 -0.4555 2.4413 15 6 5.9892 -0.6733 0.0019 16 6 4.8219 -1.3732 0.0020 17 6 3.5999 -0.7021 0.0013 18 7 2.2861 -1.1161 0.0005 19 1 1.9735 -2.0344 0.0006 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 4.7358 2.5065 0.0000 24 1 10.3010 0.9939 0.7482 25 1 6.9316 -1.2009 0.0028 26 1 4.8423 -2.4529 0.0023 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082587708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:55 Heat of formation + Delta-G solvation = 54.428484 kcal Electronic energy + Delta-G solvation = -12181.421163 eV Core-core repulsion = 10032.025826 eV Total energy + Delta-G solvation = -2149.395337 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 202.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05296 -36.58980 -33.28504 -32.22015 -30.87111 -29.35816 -27.48465 -24.42343 -21.27914 -20.91668 -19.95736 -17.69440 -16.89314 -15.42923 -15.28093 -14.71791 -13.85193 -13.16765 -13.01506 -12.66630 -12.51533 -12.50389 -12.28258 -11.50279 -11.03720 -10.65611 -10.36706 -10.02152 -9.89323 -9.69351 -9.14457 -8.99750 -7.31504 -7.15126 -6.88458 -4.37436 1.99363 2.63302 3.09041 3.19806 3.31620 3.65349 3.66500 3.99603 4.53836 4.78998 5.29946 5.42005 5.58621 5.64765 5.86324 5.99165 6.25135 6.52619 6.59041 6.68978 7.01310 7.25553 7.41453 7.69952 7.78964 7.92318 8.19256 8.38959 8.65569 8.77527 8.88979 10.15043 Molecular weight = 202.08amu Principal moments of inertia in cm(-1) A = 0.066976 B = 0.009729 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.961675 B = 2877.241857 C = 3133.737945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.252 3.748 3 N -0.511 5.511 4 C 0.090 3.910 5 C -0.190 4.190 6 C 0.087 3.913 7 C -0.449 4.449 8 H 0.092 0.908 9 C 0.084 3.916 10 N -0.813 5.813 11 Si 0.904 3.096 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.245 1.245 15 C -0.176 4.176 16 C -0.088 4.088 17 C -0.048 4.048 18 N -0.604 5.604 19 H 0.407 0.593 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.108 0.892 24 H 0.284 0.716 25 H 0.111 0.889 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -6.883 1.048 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.014 4.014 3 N -0.235 5.235 4 C -0.025 4.025 5 C -0.213 4.213 6 C 0.083 3.917 7 C -0.478 4.478 8 H 0.110 0.890 9 C -0.133 4.133 10 N -0.438 5.438 11 Si 0.731 3.269 12 H -0.197 1.197 13 H -0.216 1.216 14 H -0.169 1.169 15 C -0.196 4.196 16 C -0.109 4.109 17 C -0.153 4.153 18 N -0.219 5.219 19 H 0.243 0.757 20 H 0.096 0.904 21 H 0.088 0.912 22 H 0.107 0.893 23 H 0.126 0.874 24 H 0.094 0.906 25 H 0.129 0.871 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.274 -5.930 1.059 11.910 hybrid contribution 0.318 -1.980 0.493 2.065 sum -9.956 -7.910 1.552 12.810 Atomic orbital electron populations 1.20194 0.85653 1.03631 1.03203 1.23268 0.94906 0.81996 1.01258 1.70356 1.01987 1.27391 1.23772 1.18890 0.90903 0.90261 1.02485 1.20039 0.88226 0.97987 1.15044 1.17482 0.92991 0.90751 0.90516 1.19333 0.91205 1.05082 1.32209 0.89001 1.26076 0.94272 0.96812 0.96170 1.69718 0.99028 1.39138 1.35900 0.86456 0.79797 0.80439 0.80226 1.19682 1.21579 1.16860 1.20839 0.95905 0.94991 1.07862 1.19255 0.89642 0.97380 1.04645 1.18565 0.84317 0.95431 1.17031 1.42583 1.05391 1.08342 1.65559 0.75668 0.90353 0.91154 0.89326 0.87407 0.90600 0.87131 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.51 36.00 0.38 -0.38 15 2 C 0.25 4.44 8.07 -154.80 -1.25 3.19 15 3 N -0.51 -11.37 11.29 -8.24 -0.09 -11.46 15 4 C 0.09 2.20 7.21 -84.70 -0.61 1.59 15 5 C -0.19 -4.90 9.85 -38.46 -0.38 -5.28 15 6 C 0.09 2.28 5.10 -106.85 -0.54 1.73 15 7 C -0.45 -12.35 9.55 -37.80 -0.36 -12.71 15 8 H 0.09 2.66 8.06 -52.48 -0.42 2.23 15 9 C 0.08 2.23 5.40 -17.34 -0.09 2.14 15 10 N -0.81 -21.84 13.93 55.54 0.77 -21.07 15 11 Si 0.90 20.60 24.51 -169.99 -4.17 16.43 15 12 H -0.27 -5.86 6.70 56.52 0.38 -5.48 15 13 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 14 H -0.25 -5.78 6.87 56.52 0.39 -5.39 15 15 C -0.18 -4.24 7.09 -39.25 -0.28 -4.52 15 16 C -0.09 -1.91 9.99 -39.91 -0.40 -2.31 15 17 C -0.05 -1.06 7.31 -83.77 -0.61 -1.67 15 18 N -0.60 -10.48 6.21 -7.83 -0.05 -10.53 15 19 H 0.41 5.26 8.96 -40.82 -0.37 4.89 15 20 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.11 2.73 8.06 -52.49 -0.42 2.30 15 24 H 0.28 6.89 8.30 -40.82 -0.34 6.55 15 25 H 0.11 2.58 4.71 -52.48 -0.25 2.33 15 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 227.25 15.07 3.42 3.42 Total: -1.00 -30.98 227.25 -6.58 -37.56 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -2.32 Total: 3.87 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -4.15 Total: -18.23 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.63 Total: -43.06 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.43 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.98 -6.58 -37.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082587708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.991 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds