Wall clock time and date at job start Thu Apr 9 2020 14:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30062 * 124.91056 * 2 1 4 4 C 1.35944 * 109.54210 * 179.97438 * 3 2 1 5 5 C 1.39147 * 133.45138 * 179.97438 * 4 3 2 6 6 C 1.40324 * 119.41861 * 179.74643 * 5 4 3 7 7 C 1.41316 * 120.01039 * 180.25561 * 6 5 4 8 8 H 1.08004 * 120.00471 * 330.32826 * 7 6 5 9 9 C 1.39880 * 119.99792 * 150.32816 * 7 6 5 10 10 N 1.30881 * 120.00053 * 161.73356 * 9 7 6 11 11 Si 1.86797 * 119.99989 * 341.72830 * 9 7 6 12 12 H 1.48498 * 109.47178 * 95.42282 * 11 9 7 13 13 H 1.48503 * 109.47274 * 215.42661 * 11 9 7 14 14 H 1.48501 * 109.47009 * 335.42308 * 11 9 7 15 15 C 1.41122 * 119.97300 * 0.51794 * 6 5 4 16 16 C 1.36110 * 120.36917 * 359.48021 * 15 6 5 17 17 C 1.39407 * 120.28130 * 0.25967 * 16 15 6 18 18 N 1.36110 * 124.91789 * 179.97438 * 2 1 3 19 19 H 0.97004 * 126.28227 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.47139 * 89.96996 * 1 2 3 21 21 H 1.08999 * 109.47365 * 209.97367 * 1 2 3 22 22 H 1.09001 * 109.47445 * 329.97536 * 1 2 3 23 23 H 1.07994 * 120.28902 * 0.02562 * 5 4 3 24 24 H 0.97005 * 119.99944 * 179.97438 * 10 9 7 25 25 H 1.08005 * 119.81638 * 179.76639 * 15 6 5 26 26 H 1.07996 * 119.85835 * 180.23954 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2513 1.0666 0.0000 4 6 3.5622 0.7063 0.0006 5 6 4.7526 1.4267 0.0004 6 6 5.9751 0.7378 0.0066 7 6 7.1916 1.4569 0.0119 8 1 7.2452 2.4311 -0.4514 9 6 8.3264 0.9071 0.6173 10 7 9.5140 1.3750 0.3281 11 14 8.1468 -0.4949 1.8386 12 1 8.3397 -1.7897 1.1376 13 1 9.1678 -0.3539 2.9077 14 1 6.7902 -0.4555 2.4413 15 6 5.9892 -0.6733 0.0019 16 6 4.8219 -1.3732 0.0020 17 6 3.5999 -0.7021 0.0013 18 7 2.2861 -1.1161 0.0005 19 1 1.9735 -2.0344 0.0006 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 4.7358 2.5065 0.0000 24 1 10.3010 0.9939 0.7482 25 1 6.9316 -1.2009 0.0028 26 1 4.8423 -2.4529 0.0023 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082587708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:55 Heat of formation + Delta-G solvation = 32.818539 kcal Electronic energy + Delta-G solvation = -12182.358240 eV Core-core repulsion = 10032.025826 eV Total energy + Delta-G solvation = -2150.332414 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 202.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.67893 -38.39865 -35.20932 -33.86965 -32.31291 -31.07232 -29.11556 -26.22486 -23.02805 -22.69191 -21.49647 -19.56783 -18.55331 -17.24767 -17.04592 -16.19097 -15.60538 -14.95039 -14.70312 -14.30315 -13.99882 -13.83209 -13.34289 -13.21360 -12.77375 -12.55487 -12.19945 -11.79114 -11.72895 -11.37756 -11.01602 -10.69950 -9.13754 -8.91314 -8.85506 -6.43111 0.29488 0.79964 1.26773 1.42015 1.51188 2.03093 2.16026 2.24798 2.61944 3.43797 3.51518 3.94575 4.37270 4.38347 4.69582 4.73324 4.79130 4.86286 4.88765 5.15057 5.16410 5.40965 5.64901 5.75949 5.94787 6.07209 6.29610 6.71452 6.77356 6.84431 7.21209 8.23595 Molecular weight = 202.08amu Principal moments of inertia in cm(-1) A = 0.066976 B = 0.009729 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.961675 B = 2877.241857 C = 3133.737945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.278 3.722 3 N -0.561 5.561 4 C 0.066 3.934 5 C -0.220 4.220 6 C 0.075 3.925 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.048 3.952 10 N -0.853 5.853 11 Si 0.965 3.035 12 H -0.243 1.243 13 H -0.275 1.275 14 H -0.258 1.258 15 C -0.195 4.195 16 C -0.072 4.072 17 C -0.049 4.049 18 N -0.586 5.586 19 H 0.434 0.566 20 H 0.103 0.897 21 H 0.110 0.890 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.294 0.706 25 H 0.119 0.881 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.038 -10.402 1.716 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.011 3.989 3 N -0.285 5.285 4 C -0.050 4.050 5 C -0.243 4.243 6 C 0.071 3.929 7 C -0.518 4.518 8 H 0.068 0.932 9 C -0.166 4.166 10 N -0.480 5.480 11 Si 0.787 3.213 12 H -0.168 1.168 13 H -0.202 1.202 14 H -0.182 1.182 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.155 4.155 18 N -0.201 5.201 19 H 0.275 0.725 20 H 0.121 0.879 21 H 0.129 0.871 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.137 0.863 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.974 -9.485 1.710 16.162 hybrid contribution 0.834 -0.858 0.216 1.216 sum -12.140 -10.343 1.926 16.064 Atomic orbital electron populations 1.20535 0.80605 1.05907 1.05444 1.24513 0.97270 0.80749 0.96388 1.70370 1.01366 1.29941 1.26871 1.19079 0.91473 0.91823 1.02668 1.20044 0.89654 0.97398 1.17170 1.17550 0.92197 0.92275 0.90877 1.19304 0.93321 1.04365 1.34834 0.93187 1.26820 0.93402 0.99265 0.97128 1.69747 0.99857 1.41002 1.37348 0.85538 0.79160 0.78463 0.78139 1.16766 1.20180 1.18182 1.20900 0.97486 0.93769 1.09293 1.19639 0.88418 0.99617 1.01613 1.18703 0.86382 0.94504 1.15946 1.42549 1.03438 1.09942 1.64204 0.72498 0.87907 0.87147 0.88804 0.89505 0.89532 0.86325 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.51 71.24 0.75 -0.38 15 2 C 0.28 8.71 8.07 137.91 1.11 9.82 15 3 N -0.56 -24.30 11.29 -179.98 -2.03 -26.33 15 4 C 0.07 3.20 7.21 39.37 0.28 3.49 15 5 C -0.22 -11.93 9.85 23.00 0.23 -11.70 15 6 C 0.08 4.09 5.10 -21.31 -0.11 3.98 15 7 C -0.49 -28.78 9.55 23.42 0.22 -28.55 15 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 15 9 C 0.05 2.61 5.40 85.23 0.46 3.07 15 10 N -0.85 -47.64 13.93 21.82 0.30 -47.34 15 11 Si 0.96 42.30 24.51 68.60 1.68 43.98 15 12 H -0.24 -9.54 6.70 99.48 0.67 -8.87 15 13 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 14 H -0.26 -11.74 6.87 99.48 0.68 -11.06 15 15 C -0.19 -9.18 7.09 22.48 0.16 -9.02 15 16 C -0.07 -2.90 9.99 22.06 0.22 -2.68 15 17 C -0.05 -2.00 7.31 39.14 0.29 -1.71 15 18 N -0.59 -17.58 6.21 -178.69 -1.11 -18.69 15 19 H 0.43 8.53 8.96 -92.71 -0.83 7.70 15 20 H 0.10 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.11 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.09 4.84 8.06 -2.91 -0.02 4.82 15 24 H 0.29 14.62 8.30 -92.70 -0.77 13.85 15 25 H 0.12 5.32 4.71 -2.91 -0.01 5.30 15 26 H 0.15 4.41 8.06 -2.91 -0.02 4.39 15 Total: -1.00 -72.17 227.25 2.77 -69.39 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.31 Total: 12.67 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.61 Total: -33.69 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -2.84 Total: -92.36 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.68 Total: 43.98 kcal Total: -72.17 2.77 -69.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082587708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.213 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds