Wall clock time and date at job start Thu Apr 9 2020 14:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33892 * 126.87203 * 2 1 4 4 N 1.21073 * 113.64524 * 180.02562 * 3 2 1 5 5 C 1.31644 * 111.87280 * 359.97438 * 4 3 2 6 6 C 1.40376 * 136.09882 * 179.97438 * 5 4 3 7 7 C 1.39699 * 119.78976 * 180.02562 * 6 5 4 8 8 C 1.40946 * 119.37098 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99721 * 25.17371 * 8 7 6 10 10 C 1.40052 * 120.00168 * 205.18100 * 8 7 6 11 11 N 1.30750 * 120.00025 * 18.12950 * 10 8 7 12 12 Si 1.86800 * 119.99752 * 198.13435 * 10 8 7 13 13 H 1.48503 * 109.47309 * 94.68946 * 12 10 8 14 14 H 1.48504 * 109.47097 * 214.68263 * 12 10 8 15 15 H 1.48490 * 109.47347 * 334.68169 * 12 10 8 16 16 C 1.46100 * 121.25956 * 0.02562 * 7 6 5 17 17 C 1.35161 * 120.87131 * 359.97438 * 16 7 6 18 18 C 1.37425 * 126.86496 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47294 * 269.96523 * 1 2 3 20 20 H 1.08999 * 109.46362 * 29.96546 * 1 2 3 21 21 H 1.08997 * 109.46889 * 149.95730 * 1 2 3 22 22 H 1.08005 * 120.10539 * 0.04924 * 6 5 4 23 23 H 0.97003 * 119.99898 * 180.02562 * 11 10 8 24 24 H 1.08000 * 119.56054 * 179.71890 * 16 7 6 25 25 H 1.08000 * 120.29560 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3104 1.0711 0.0000 4 7 3.4890 0.7941 -0.0005 5 6 3.6869 -0.5074 -0.0004 6 6 4.8013 -1.3610 -0.0012 7 6 4.6150 -2.7455 -0.0012 8 6 5.7402 -3.5944 -0.0026 9 1 6.6815 -3.2440 0.3943 10 6 5.6376 -4.8923 -0.5188 11 7 4.6422 -5.2058 -1.3064 12 14 6.9228 -6.1755 -0.0817 13 1 6.4510 -6.9736 1.0783 14 1 7.1410 -7.0735 -1.2442 15 1 8.1980 -5.4998 0.2680 16 6 3.2762 -3.3304 -0.0010 17 6 2.1763 -2.5449 -0.0002 18 6 2.3315 -1.0995 -0.0005 19 1 -0.3634 -0.0006 1.0276 20 1 -0.3632 0.8903 -0.5133 21 1 -0.3633 -0.8896 -0.5145 22 1 5.7996 -0.9487 -0.0014 23 1 4.5709 -6.1049 -1.6636 24 1 3.1640 -4.4045 -0.0057 25 1 1.1910 -2.9871 0.0003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270528.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:37 Heat of formation + Delta-G solvation = 42.179936 kcal Electronic energy + Delta-G solvation = -12278.928742 eV Core-core repulsion = 10031.283606 eV Total energy + Delta-G solvation = -2247.645136 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.02384 -38.50553 -35.70929 -34.13402 -32.68989 -31.40396 -28.41127 -27.70565 -24.30140 -23.60010 -20.77317 -19.53393 -18.20618 -17.98238 -17.57295 -17.03798 -15.63709 -14.74575 -14.67992 -14.35024 -13.86534 -13.73128 -13.34124 -13.08325 -12.90863 -12.62636 -12.60114 -12.17948 -11.83379 -11.20236 -11.10873 -10.92317 -9.79171 -8.99627 -8.59773 -6.57232 -0.04091 0.95322 1.38657 1.49421 1.53606 1.65437 2.14889 2.46599 2.56402 3.40442 3.50169 3.90706 4.17163 4.38165 4.57196 4.79612 4.80470 4.88248 4.94865 5.04054 5.29994 5.52799 5.61519 5.73204 5.84671 6.04851 6.30944 6.67292 6.75360 7.87628 8.06536 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.068435 B = 0.008896 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.050080 B = 3146.735531 C = 3475.666039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.015 4.015 3 O 0.077 5.923 4 N -0.476 5.476 5 C 0.082 3.918 6 C -0.357 4.357 7 C 0.119 3.881 8 C -0.462 4.462 9 H 0.081 0.919 10 C 0.042 3.958 11 N -0.795 5.795 12 Si 0.994 3.006 13 H -0.252 1.252 14 H -0.260 1.260 15 H -0.262 1.262 16 C -0.105 4.105 17 C -0.087 4.087 18 C -0.244 4.244 19 H 0.106 0.894 20 H 0.101 0.899 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.303 0.697 24 H 0.135 0.865 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 -2.551 1.495 8.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 O 0.025 5.975 4 N -0.198 5.198 5 C -0.061 4.061 6 C -0.382 4.382 7 C 0.113 3.887 8 C -0.490 4.490 9 H 0.100 0.900 10 C -0.178 4.178 11 N -0.419 5.419 12 Si 0.813 3.187 13 H -0.176 1.176 14 H -0.184 1.184 15 H -0.186 1.186 16 C -0.123 4.123 17 C -0.106 4.106 18 C -0.247 4.247 19 H 0.124 0.876 20 H 0.120 0.880 21 H 0.121 0.879 22 H 0.094 0.906 23 H 0.115 0.885 24 H 0.153 0.847 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.831 -1.606 1.329 7.142 hybrid contribution 0.815 -0.937 -0.014 1.241 sum -6.016 -2.543 1.315 6.663 Atomic orbital electron populations 1.20500 0.79714 1.05824 1.05379 1.25112 0.97082 0.84840 1.01227 1.84429 1.11246 1.33779 1.68031 1.74027 0.95347 1.15773 1.34671 1.21929 0.96703 0.89229 0.98259 1.19361 0.93296 0.91820 1.33766 1.18673 0.93631 0.90710 0.85677 1.20051 0.97507 0.97585 1.33849 0.90046 1.26977 0.98954 1.00537 0.91362 1.69759 1.29501 1.23089 1.19529 0.85000 0.77686 0.76443 0.79548 1.17596 1.18392 1.18613 1.22403 0.91446 1.00056 0.98388 1.21102 0.99181 0.88231 1.02091 1.21249 0.92058 0.96183 1.15236 0.87617 0.88023 0.87916 0.90592 0.88505 0.84718 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 10.46 71.24 0.75 -0.52 15 2 C -0.01 -0.57 7.57 25.49 0.19 -0.38 15 3 O 0.08 3.43 11.06 72.83 0.81 4.23 15 4 N -0.48 -25.14 12.12 -49.29 -0.60 -25.74 15 5 C 0.08 4.53 7.56 42.26 0.32 4.85 15 6 C -0.36 -20.78 9.81 23.14 0.23 -20.55 15 7 C 0.12 6.59 5.68 -20.22 -0.11 6.47 15 8 C -0.46 -24.32 8.98 23.37 0.21 -24.11 15 9 H 0.08 4.24 7.91 -2.91 -0.02 4.22 15 10 C 0.04 1.92 5.12 85.29 0.44 2.35 15 11 N -0.79 -37.02 10.92 21.84 0.24 -36.78 15 12 Si 0.99 34.41 29.60 68.60 2.03 36.44 15 13 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 14 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 15 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 16 C -0.10 -5.15 8.71 23.60 0.21 -4.94 15 17 C -0.09 -3.79 10.25 23.40 0.24 -3.55 15 18 C -0.24 -11.37 6.62 -19.07 -0.13 -11.50 15 19 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 20 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.08 4.51 8.06 -2.91 -0.02 4.49 15 23 H 0.30 12.27 8.29 -92.71 -0.77 11.50 15 24 H 0.14 6.36 6.19 -2.91 -0.02 6.34 15 25 H 0.15 5.10 8.06 -2.91 -0.02 5.08 15 Total: -1.00 -66.27 228.72 6.02 -60.25 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.21 Total: 13.46 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 2.34 Total: -51.87 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.36 Total: -62.51 kcal Atomic # 8 Polarization: 3.43 SS G_CDS: 0.81 Total: 4.23 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -66.27 6.02 -60.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270528.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.428 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds