Wall clock time and date at job start Thu Apr 9 2020 14:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99845 * 2 1 4 4 H 1.48497 * 109.47103 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47266 * 30.00229 * 3 2 1 6 6 H 1.48499 * 109.47018 * 149.99857 * 3 2 1 7 7 C 1.37869 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00304 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00142 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47497 * 180.02562 * 9 7 2 11 11 C 1.35786 * 120.31783 * 264.97875 * 10 9 7 12 12 C 1.39826 * 121.70713 * 179.73156 * 11 10 9 13 13 C 1.35648 * 122.03330 * 0.58678 * 12 11 10 14 14 C 1.41048 * 119.49637 * 359.44117 * 13 12 11 15 15 N 1.31260 * 136.70985 * 180.25634 * 14 13 12 16 16 O 1.21103 * 112.02587 * 180.02562 * 15 14 13 17 17 C 1.33670 * 113.65259 * 359.97438 * 16 15 14 18 18 C 1.37858 * 106.17859 * 0.02562 * 17 16 15 19 19 H 0.97000 * 120.00113 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47198 * 59.99636 * 9 7 2 21 21 H 1.09007 * 109.47284 * 300.00031 * 9 7 2 22 22 H 1.07991 * 119.14915 * 0.02562 * 11 10 9 23 23 H 1.07998 * 118.98405 * 180.30395 * 12 11 10 24 24 H 1.08002 * 120.25458 * 179.72741 * 13 12 11 25 25 H 1.08001 * 126.91289 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 6 4.3395 -3.2266 1.1677 12 6 4.8031 -4.5454 1.2021 13 6 4.9640 -5.2811 0.0739 14 6 4.6462 -4.7126 -1.1772 15 7 4.6645 -5.0949 -2.4327 16 8 4.2858 -4.2199 -3.1795 17 6 3.9441 -3.0901 -2.5521 18 6 4.1504 -3.3194 -1.2085 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6796 0.8894 21 1 3.8745 -0.6808 -0.8906 22 1 4.2333 -2.6822 2.0943 23 1 5.0447 -4.9904 2.1560 24 1 5.3283 -6.2961 0.1335 25 1 3.5798 -2.1806 -3.0065 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261309256.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:48 Heat of formation + Delta-G solvation = 55.138801 kcal Electronic energy + Delta-G solvation = -12313.249761 eV Core-core repulsion = 10066.166564 eV Total energy + Delta-G solvation = -2247.083197 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.61996 -39.49750 -35.57196 -33.96773 -33.19677 -31.97206 -29.39476 -25.85002 -24.50301 -24.08410 -20.73751 -19.09880 -18.94630 -18.52780 -18.47785 -16.71947 -16.26331 -15.33069 -15.05159 -14.36851 -14.13594 -13.63554 -13.62199 -13.03754 -12.93219 -12.62447 -12.26489 -12.01455 -11.70133 -11.39289 -11.19518 -10.77372 -10.31884 -8.73301 -8.28199 -6.35100 -0.53267 0.59763 1.29791 1.40632 1.43237 1.54130 2.22533 2.37235 2.72087 2.91203 3.06377 3.50337 4.02204 4.13984 4.25057 4.40869 4.68373 4.76556 4.94618 5.02073 5.19576 5.21554 5.47283 5.54733 5.81031 5.92488 6.25516 6.71434 7.24644 7.29012 8.88054 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.010454 C = 0.009306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.664992 B = 2677.861862 C = 3008.047056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.519 4.519 8 H 0.025 0.975 9 C 0.020 3.980 10 C 0.006 3.994 11 C -0.164 4.164 12 C -0.054 4.054 13 C -0.134 4.134 14 C 0.027 3.973 15 N -0.408 5.408 16 O 0.126 5.874 17 C -0.006 4.006 18 C -0.202 4.202 19 H 0.268 0.732 20 H 0.041 0.959 21 H 0.039 0.961 22 H 0.137 0.863 23 H 0.168 0.832 24 H 0.151 0.849 25 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 -3.789 -0.537 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.557 4.557 8 H 0.043 0.957 9 C -0.017 4.017 10 C 0.004 3.996 11 C -0.182 4.182 12 C -0.076 4.076 13 C -0.153 4.153 14 C -0.120 4.120 15 N -0.115 5.115 16 O 0.063 5.937 17 C -0.094 4.094 18 C -0.205 4.205 19 H 0.077 0.923 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.155 0.845 23 H 0.185 0.815 24 H 0.169 0.831 25 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 11.164 -4.896 -1.158 12.245 hybrid contribution -0.601 1.289 0.498 1.507 sum 10.563 -3.607 -0.661 11.182 Atomic orbital electron populations 1.70058 1.08461 1.28360 1.51948 1.25939 0.95480 1.03282 0.93793 0.85677 0.79534 0.78006 0.79614 1.18552 1.21355 1.16617 1.21015 0.90398 0.92884 1.51377 0.95693 1.18709 0.94420 0.89982 0.98570 1.19300 0.92855 0.96676 0.90759 1.20947 1.03106 0.96339 0.97805 1.21121 0.94448 0.92872 0.99138 1.20132 1.05949 1.01487 0.87721 1.22424 1.02051 0.93755 0.93725 1.74017 1.23133 1.12114 1.02235 1.84544 1.57229 1.17073 1.34830 1.26647 0.98875 0.92473 0.91372 1.20518 1.08708 0.95909 0.95402 0.92314 0.94031 0.94297 0.84509 0.81465 0.83134 0.72838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 13.96 21.44 0.30 -56.98 15 2 C 0.01 0.69 5.47 84.65 0.46 1.16 15 3 Si 0.95 40.96 27.47 68.60 1.88 42.84 15 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.24 -9.57 6.54 99.48 0.65 -8.92 15 7 C -0.52 -28.35 9.65 25.60 0.25 -28.10 15 8 H 0.02 1.56 7.98 -2.91 -0.02 1.53 15 9 C 0.02 0.89 4.17 29.10 0.12 1.01 15 10 C 0.01 0.22 5.07 -19.87 -0.10 0.12 15 11 C -0.16 -5.66 9.55 22.09 0.21 -5.44 15 12 C -0.05 -1.55 9.89 22.05 0.22 -1.33 15 13 C -0.13 -4.11 10.09 22.36 0.23 -3.89 15 14 C 0.03 1.00 7.61 42.48 0.32 1.32 15 15 N -0.41 -14.99 12.10 -49.14 -0.59 -15.58 15 16 O 0.13 4.23 11.05 74.83 0.83 5.06 15 17 C -0.01 -0.20 12.39 67.73 0.84 0.64 15 18 C -0.20 -7.76 6.27 -20.24 -0.13 -7.89 15 19 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 20 H 0.04 1.75 7.09 -2.39 -0.02 1.73 15 21 H 0.04 1.59 7.56 -2.38 -0.02 1.57 15 22 H 0.14 4.32 8.04 -2.92 -0.02 4.29 15 23 H 0.17 3.25 8.06 -2.91 -0.02 3.22 15 24 H 0.15 3.73 8.06 -2.91 -0.02 3.71 15 25 H 0.26 6.61 8.06 -2.91 -0.02 6.59 15 Total: -1.00 -66.68 228.63 5.98 -60.70 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.14 Total: 6.36 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 2.42 Total: -42.40 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -0.30 Total: -72.56 kcal Atomic # 8 Polarization: 4.23 SS G_CDS: 0.83 Total: 5.06 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal Total: -66.68 5.98 -60.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309256.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.841 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds