Wall clock time and date at job start Thu Apr 9 2020 14:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34426 * 126.82655 * 125.00302 * 10 9 7 12 12 N 1.30830 * 108.08020 * 179.97438 * 11 10 9 13 13 C 1.33238 * 109.83351 * 359.97438 * 12 11 10 14 14 C 1.50696 * 125.53436 * 179.97438 * 13 12 11 15 15 F 1.39901 * 109.46919 * 30.02368 * 14 13 12 16 16 F 1.39897 * 109.47190 * 150.02258 * 14 13 12 17 17 N 1.30722 * 108.94054 * 359.75571 * 13 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08003 * 125.95932 * 359.97438 * 11 10 9 22 22 H 1.09001 * 109.46841 * 270.02893 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2572 -4.6301 0.8666 12 7 3.2452 -5.4138 0.5185 13 6 3.8420 -4.9321 -0.5710 14 6 5.0211 -5.5560 -1.2721 15 9 4.9845 -6.9440 -1.1007 16 9 4.9660 -5.2531 -2.6367 17 7 3.2359 -3.8329 -0.9359 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 1.5999 -4.7753 1.7112 22 1 5.9453 -5.1620 -0.8493 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306481445.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:26 Heat of formation + Delta-G solvation = -37.837242 kcal Electronic energy + Delta-G solvation = -12575.041710 eV Core-core repulsion = 9801.989990 eV Total energy + Delta-G solvation = -2773.051720 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.04178 -48.07191 -43.05784 -36.10588 -34.15644 -32.55098 -30.05943 -27.84804 -25.16140 -22.92058 -22.00886 -18.82234 -18.62344 -18.48047 -18.12512 -17.18823 -16.50509 -16.07460 -15.53555 -14.88165 -14.45982 -14.41670 -14.33887 -13.85846 -13.35407 -12.91083 -12.65345 -12.64065 -12.34031 -11.82107 -11.12027 -10.88512 -10.83045 -10.51773 -8.40396 -6.53261 0.62929 1.36495 1.37481 1.41364 1.52754 1.67342 2.30940 2.45501 2.94399 3.02391 3.30001 3.84913 3.95687 4.20224 4.75673 4.82550 5.09206 5.29206 5.49183 5.73548 5.99030 6.54341 6.96850 7.17548 8.69018 Molecular weight = 203.06amu Principal moments of inertia in cm(-1) A = 0.053524 B = 0.008338 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.004301 B = 3357.210418 C = 3673.960100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.263 3.737 10 N -0.347 5.347 11 C 0.252 3.748 12 N -0.549 5.549 13 C 0.112 3.888 14 C 0.384 3.616 15 F -0.188 7.188 16 F -0.197 7.197 17 N -0.312 5.312 18 H 0.274 0.726 19 H 0.077 0.923 20 H 0.029 0.971 21 H 0.264 0.736 22 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 -6.920 1.533 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.071 0.929 9 C 0.144 3.856 10 N -0.136 5.136 11 C -0.043 4.043 12 N -0.278 5.278 13 C -0.172 4.172 14 C 0.328 3.672 15 F -0.170 7.170 16 F -0.179 7.179 17 N -0.144 5.144 18 H 0.083 0.917 19 H 0.095 0.905 20 H 0.047 0.953 21 H 0.279 0.721 22 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.231 -6.618 1.060 9.151 hybrid contribution -0.284 0.915 -0.049 0.960 sum 5.947 -5.703 1.011 8.301 Atomic orbital electron populations 1.69977 1.07122 1.28913 1.49423 1.25684 0.95823 1.02641 0.93666 0.85309 0.78442 0.78437 0.78308 1.19893 1.20097 1.19360 1.21367 0.93392 0.90810 1.53571 0.92870 1.19611 0.85552 0.81049 0.99350 1.51075 1.23072 1.20818 1.18658 1.26880 0.96655 0.84113 0.96680 1.70269 1.10945 1.31535 1.15042 1.25206 1.01463 0.94130 0.96413 1.19551 0.95276 0.75994 0.76404 1.93011 1.97526 1.31299 1.95129 1.93014 1.97545 1.92921 1.34386 1.77972 1.02737 1.18301 1.15352 0.91675 0.90549 0.95333 0.72078 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.29 21.45 0.28 -49.11 14 2 C 0.02 1.22 5.46 84.66 0.46 1.68 14 3 Si 0.97 41.81 29.54 68.60 2.03 43.84 14 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 14 5 H -0.28 -11.63 7.11 99.48 0.71 -10.93 14 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 14 7 C -0.55 -29.41 9.27 25.60 0.24 -29.18 14 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 14 9 C 0.26 12.51 6.30 85.64 0.54 13.05 14 10 N -0.35 -14.96 3.68 -355.82 -1.31 -16.27 14 11 C 0.25 8.76 12.63 180.36 2.28 11.04 14 12 N -0.55 -20.18 11.12 -191.80 -2.13 -22.31 14 13 C 0.11 4.25 7.67 138.63 1.06 5.31 14 14 C 0.38 11.16 5.86 71.23 0.42 11.57 14 15 F -0.19 -5.58 17.27 44.97 0.78 -4.80 14 16 F -0.20 -6.36 17.26 44.97 0.78 -5.58 14 17 N -0.31 -13.94 12.48 -51.33 -0.64 -14.58 14 18 H 0.27 13.84 8.31 -92.70 -0.77 13.06 14 19 H 0.08 3.40 8.09 -2.38 -0.02 3.38 14 20 H 0.03 1.48 8.14 -2.39 -0.02 1.46 14 21 H 0.26 6.13 8.06 -2.91 -0.02 6.11 14 22 H 0.18 3.53 8.14 -2.39 -0.02 3.51 14 Total: -1.00 -63.30 221.68 6.02 -57.27 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: 1.25 Total: -1.93 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.00 Total: 13.48 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.80 Total: -102.28 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 1.55 Total: -10.38 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -63.30 6.02 -57.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306481445.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.435 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds