Wall clock time and date at job start Thu Apr 9 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39768 * 120.09469 * 356.32254 * 3 2 1 5 5 C 1.37720 * 119.90468 * 180.02562 * 4 3 2 6 6 C 1.38989 * 120.09090 * 0.02562 * 5 4 3 7 7 O 1.35755 * 119.90413 * 179.97438 * 6 5 4 8 8 C 1.38939 * 120.19161 * 359.97438 * 6 5 4 9 9 C 1.50698 * 119.95542 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47294 * 84.99562 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47288 * 59.99994 * 14 12 10 16 16 H 1.48503 * 109.47086 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46819 * 299.99648 * 14 12 10 18 18 C 1.37758 * 120.09593 * 0.27185 * 8 6 5 19 19 H 1.08003 * 120.05410 * 359.97438 * 4 3 2 20 20 H 1.07992 * 119.95414 * 179.97438 * 5 4 3 21 21 H 0.96692 * 114.00117 * 270.02746 * 7 6 5 22 22 H 1.09001 * 109.46665 * 324.99943 * 9 8 6 23 23 H 1.09000 * 109.47722 * 205.00275 * 9 8 6 24 24 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 25 25 H 1.08004 * 120.04815 * 179.70986 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.2058 0.0776 5 6 4.6466 -1.2006 0.0778 6 6 5.3389 0.0022 0.0016 7 8 6.6965 0.0029 0.0026 8 6 4.6456 1.2037 -0.0756 9 6 5.4017 2.5047 -0.1587 10 6 5.7615 2.7859 -1.5949 11 1 5.4713 2.0921 -2.3700 12 6 6.4611 3.9288 -1.9192 13 7 6.8149 4.7734 -0.9752 14 14 6.9065 4.2777 -3.6995 15 1 5.6662 4.3741 -4.5103 16 1 7.6516 5.5596 -3.7812 17 1 7.7554 3.1769 -4.2221 18 6 3.2681 1.2079 -0.0714 19 1 2.7322 -2.1408 0.1381 20 1 5.1893 -2.1323 0.1381 21 1 7.0891 0.0590 0.8845 22 1 6.3119 2.4345 0.4369 23 1 4.7782 3.3125 0.2246 24 1 7.3068 5.5777 -1.2035 25 1 2.7299 2.1427 -0.1267 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306798738.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:38 Heat of formation + Delta-G solvation = -0.702954 kcal Electronic energy + Delta-G solvation = -11949.840584 eV Core-core repulsion = 9700.335906 eV Total energy + Delta-G solvation = -2249.504677 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.53524 -36.93680 -35.58358 -33.54263 -31.44122 -30.00256 -27.17681 -23.53502 -23.07374 -21.20975 -18.12399 -17.70370 -16.35174 -15.66637 -15.01589 -14.59820 -13.91525 -13.71522 -13.21629 -12.82618 -12.73921 -12.32985 -12.02793 -11.55933 -11.41924 -11.17384 -10.80276 -10.58483 -10.21909 -9.63468 -9.48362 -8.49511 -8.44300 -8.02230 -6.07111 -4.09746 1.05417 1.72779 2.86804 3.17787 3.32664 3.36283 3.40496 4.13176 4.15800 4.44604 4.64970 5.18578 5.22872 5.29707 5.66186 5.84943 6.07384 6.31691 6.43986 6.66648 6.80110 7.09539 7.43628 7.58966 7.69585 7.87938 8.13501 8.26534 8.92998 9.53751 11.03130 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.009254 C = 0.008151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.434783 B = 3025.070209 C = 3434.291507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.270 3.730 3 C -0.053 4.053 4 C -0.080 4.080 5 C -0.153 4.153 6 C 0.136 3.864 7 O -0.482 6.482 8 C -0.065 4.065 9 C 0.055 3.945 10 C -0.506 4.506 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.059 4.059 19 H 0.126 0.874 20 H 0.130 0.870 21 H 0.386 0.614 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.263 0.737 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -9.215 3.822 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.045 4.045 3 C -0.056 4.056 4 C -0.101 4.101 5 C -0.172 4.172 6 C 0.090 3.910 7 O -0.292 6.292 8 C -0.066 4.066 9 C 0.018 3.982 10 C -0.544 4.544 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.079 4.079 19 H 0.144 0.856 20 H 0.148 0.852 21 H 0.242 0.758 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.503 -9.079 3.242 10.257 hybrid contribution 0.838 0.289 -0.538 1.037 sum -2.665 -8.790 2.704 9.575 Atomic orbital electron populations 1.81184 1.12233 1.08115 1.10250 1.25829 0.92748 0.93038 0.92879 1.16060 0.83923 0.95246 1.10378 1.20746 0.93576 0.96114 0.99667 1.21251 0.93825 0.98052 1.04051 1.18642 0.83495 0.91498 0.97352 1.84838 1.15466 1.95940 1.32925 1.21024 0.93214 0.97955 0.94362 1.18267 0.94845 0.86869 0.98204 1.20922 1.35649 1.06089 0.91751 0.92546 1.24960 0.95684 0.96040 0.97480 1.69935 1.39245 1.11952 1.32343 0.86587 0.78673 0.77493 0.84896 1.20202 1.21271 1.20086 1.21061 0.93681 0.96315 0.96868 0.85600 0.85203 0.75794 0.94725 0.95159 0.92780 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.55 18.54 41.84 0.78 -6.78 15 2 C 0.27 4.21 15.33 -22.47 -0.34 3.87 15 3 C -0.05 -0.79 5.74 -106.84 -0.61 -1.41 15 4 C -0.08 -1.06 9.75 -39.20 -0.38 -1.44 15 5 C -0.15 -2.11 9.97 -39.49 -0.39 -2.50 15 6 C 0.14 2.31 6.68 -39.04 -0.26 2.05 15 7 O -0.48 -8.16 12.61 -18.97 -0.24 -8.40 15 8 C -0.06 -1.25 5.08 -104.54 -0.53 -1.78 15 9 C 0.05 1.30 4.82 -29.03 -0.14 1.16 15 10 C -0.51 -13.66 9.09 -34.44 -0.31 -13.97 15 11 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 13 N -0.90 -25.66 13.29 55.43 0.74 -24.92 15 14 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 C -0.06 -1.01 9.37 -39.20 -0.37 -1.38 15 19 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 20 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 21 H 0.39 4.56 9.06 45.56 0.41 4.97 15 22 H 0.03 0.85 7.68 -51.93 -0.40 0.45 15 23 H 0.03 0.75 8.05 -51.93 -0.42 0.33 15 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 25 H 0.13 2.23 8.06 -52.48 -0.42 1.81 15 LS Contribution 241.60 15.07 3.64 3.64 Total: -1.00 -30.37 241.60 -4.76 -35.13 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -1.21 Total: -1.10 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.44 Total: -13.84 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 1.51 Total: -31.70 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.24 Total: -8.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.37 -4.76 -35.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306798738.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.426 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds