Wall clock time and date at job start Thu Apr 9 2020 14:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38306 * 120.08268 * 2 1 4 4 C 1.37820 * 120.23099 * 180.02562 * 3 2 1 5 5 C 1.39670 * 120.28248 * 0.02562 * 4 3 2 6 6 C 1.38866 * 118.99157 * 359.90720 * 5 4 3 7 7 C 1.37957 * 120.43407 * 0.14497 * 6 5 4 8 8 C 1.51225 * 108.39494 * 179.97438 * 6 5 4 9 9 H 1.09007 * 110.41934 * 118.92689 * 8 6 5 10 10 C 1.50698 * 110.42260 * 241.27260 * 8 6 5 11 11 H 1.08005 * 119.99819 * 358.32986 * 10 8 6 12 12 C 1.37875 * 120.00046 * 178.32327 * 10 8 6 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.53746 * 104.64319 * 0.10034 * 8 6 5 19 19 N 1.39577 * 129.32260 * 179.97438 * 5 4 3 20 20 H 1.09002 * 109.47334 * 90.00041 * 1 2 3 21 21 H 1.09005 * 109.47253 * 210.00109 * 1 2 3 22 22 H 1.09008 * 109.47515 * 329.99812 * 1 2 3 23 23 H 1.08001 * 119.88373 * 0.02562 * 3 2 1 24 24 H 1.08008 * 119.86349 * 179.97438 * 4 3 2 25 25 H 1.07997 * 119.84775 * 179.90579 * 7 6 5 26 26 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 27 27 H 1.09008 * 110.29628 * 118.86986 * 18 8 6 28 28 H 1.08995 * 110.30053 * 240.90631 * 18 8 6 29 29 H 0.97001 * 124.95928 * 0.06540 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1968 0.0000 4 6 3.5784 1.2003 -0.0005 5 6 4.2859 -0.0040 -0.0016 6 6 3.5794 -1.1995 -0.0002 7 6 2.1999 -1.1961 -0.0007 8 6 4.5721 -2.3403 -0.0024 9 1 4.4509 -2.9517 0.8919 10 6 4.4025 -3.1825 -1.2406 11 1 3.6297 -2.9419 -1.9556 12 6 5.2340 -4.2601 -1.4606 13 7 6.1748 -4.5533 -0.5897 14 14 5.0243 -5.3036 -2.9957 15 1 6.0340 -6.3925 -2.9959 16 1 5.2103 -4.4551 -4.2002 17 1 3.6614 -5.8930 -3.0112 18 6 5.9494 -1.6571 -0.0027 19 7 5.6648 -0.2197 -0.0028 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.6597 2.1318 0.0004 24 1 4.1138 2.1384 -0.0009 25 1 1.6600 -2.1314 -0.0011 26 1 6.2840 -4.0112 0.2073 27 1 6.5083 -1.9324 0.8918 28 1 6.5083 -1.9333 -0.8968 29 1 6.3369 0.4798 -0.0021 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071487006.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:44 Heat of formation + Delta-G solvation = 16.689914 kcal Electronic energy + Delta-G solvation = -12706.396099 eV Core-core repulsion = 10593.478727 eV Total energy + Delta-G solvation = -2112.917372 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.52442 -36.10511 -33.28052 -30.89919 -30.45805 -27.66686 -25.70714 -24.21765 -21.95921 -20.62255 -19.68159 -17.11950 -16.38338 -15.04273 -14.46093 -14.06463 -13.72781 -13.37829 -13.12778 -12.92093 -12.20633 -11.81888 -11.70494 -11.45834 -11.18268 -10.94163 -10.70362 -10.45429 -10.13922 -9.67966 -9.17126 -8.84664 -8.44978 -7.93854 -6.52366 -6.33449 -4.14304 2.19908 2.28044 3.42739 3.43555 3.62608 4.23000 4.45764 4.61261 5.27509 5.42366 5.51791 5.71906 5.78696 6.00208 6.05209 6.15757 6.22171 6.37251 6.41739 6.45282 6.74365 6.83357 7.11691 7.25669 7.33729 7.48641 7.57308 7.98775 8.10751 8.38101 8.62739 8.79383 9.55936 10.95829 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.037624 B = 0.010871 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.030675 B = 2575.003303 C = 3088.931415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.155 4.155 3 C -0.093 4.093 4 C -0.195 4.195 5 C 0.185 3.815 6 C -0.117 4.117 7 C -0.064 4.064 8 C 0.062 3.938 9 H 0.037 0.963 10 C -0.582 4.582 11 H 0.054 0.946 12 C 0.019 3.981 13 N -0.911 5.911 14 Si 1.070 2.930 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.287 1.287 18 C 0.121 3.879 19 N -0.748 5.748 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.269 0.731 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 8.105 1.120 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C -0.112 4.112 4 C -0.218 4.218 5 C 0.081 3.919 6 C -0.121 4.121 7 C -0.083 4.083 8 C 0.043 3.957 9 H 0.055 0.945 10 C -0.621 4.621 11 H 0.072 0.928 12 C -0.185 4.185 13 N -0.547 5.547 14 Si 0.898 3.102 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.213 1.213 18 C -0.003 4.003 19 N -0.378 5.378 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.128 0.872 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.508 6.633 0.317 8.027 hybrid contribution -0.162 1.725 0.770 1.896 sum -4.670 8.359 1.087 9.636 Atomic orbital electron populations 1.20555 0.92140 1.01475 1.01169 1.19441 0.95133 0.92998 1.08179 1.20363 0.92996 0.96747 1.01057 1.20122 0.93926 0.94993 1.12757 1.18556 0.85000 0.94112 0.94215 1.20373 0.93733 0.94934 1.03085 1.20128 0.92503 0.96948 0.98736 1.18455 0.87406 0.91249 0.98551 0.94514 1.21898 1.20022 1.13746 1.06402 0.92807 1.25873 0.93059 0.96596 1.02970 1.70831 1.31688 1.40970 1.11170 0.83521 0.76154 0.76046 0.74518 1.20735 1.21443 1.21301 1.22337 1.00174 0.78156 0.99625 1.44927 1.02823 1.07785 1.82274 0.92411 0.92380 0.92689 0.87203 0.87699 0.86830 0.91977 0.94281 0.91395 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.02 36.00 0.36 -0.99 15 2 C -0.16 -2.79 5.88 -104.60 -0.62 -3.40 15 3 C -0.09 -1.60 9.68 -39.71 -0.38 -1.98 15 4 C -0.19 -3.58 10.07 -39.20 -0.39 -3.97 15 5 C 0.19 3.94 7.04 -83.57 -0.59 3.36 15 6 C -0.12 -2.72 5.51 -104.24 -0.57 -3.30 15 7 C -0.06 -1.35 9.68 -39.69 -0.38 -1.73 15 8 C 0.06 1.59 2.59 -92.28 -0.24 1.35 15 9 H 0.04 1.00 8.00 -51.93 -0.42 0.58 15 10 C -0.58 -16.27 8.41 -34.44 -0.29 -16.56 15 11 H 0.05 1.54 7.76 -52.48 -0.41 1.13 15 12 C 0.02 0.53 5.12 -17.82 -0.09 0.44 15 13 N -0.91 -26.47 13.33 55.43 0.74 -25.73 15 14 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 15 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 17 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 18 C 0.12 2.83 6.07 -3.64 -0.02 2.81 15 19 N -0.75 -15.21 6.53 -58.05 -0.38 -15.59 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.77 8.09 -51.93 -0.42 0.35 15 22 H 0.05 0.66 8.09 -51.92 -0.42 0.24 15 23 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 24 H 0.10 1.66 8.06 -52.48 -0.42 1.23 15 25 H 0.11 2.31 8.06 -52.49 -0.42 1.89 15 26 H 0.27 7.69 6.09 -40.82 -0.25 7.44 15 27 H 0.04 0.87 7.96 -51.92 -0.41 0.46 15 28 H 0.07 1.73 7.33 -51.93 -0.38 1.35 15 29 H 0.40 6.69 8.96 -40.82 -0.37 6.32 15 LS Contribution 245.76 15.07 3.70 3.70 Total: -1.00 -29.79 245.76 -7.80 -37.59 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.56 Total: 4.24 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -3.22 Total: -23.98 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.36 Total: -41.32 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.79 -7.80 -37.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487006.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.276 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds