Wall clock time and date at job start Thu Apr 9 2020 14:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86806 * 119.99895 * 2 1 4 4 H 1.48502 * 109.46958 * 275.26137 * 3 2 1 5 5 H 1.48503 * 109.47015 * 35.25873 * 3 2 1 6 6 H 1.48495 * 109.46978 * 155.25429 * 3 2 1 7 7 C 1.38910 * 120.00098 * 180.27664 * 2 1 3 8 8 H 1.07998 * 119.99946 * 173.70462 * 7 2 1 9 9 N 1.36967 * 119.99607 * 353.70774 * 7 2 1 10 10 N 1.39855 * 125.50338 * 5.93226 * 9 7 2 11 11 C 1.30471 * 110.10257 * 180.02562 * 10 9 7 12 12 C 1.46117 * 107.86512 * 359.97438 * 11 10 9 13 13 C 1.39827 * 133.82421 * 180.02562 * 12 11 10 14 14 C 1.38278 * 119.59459 * 179.97438 * 13 12 11 15 15 N 1.39827 * 119.85183 * 180.02562 * 14 13 12 16 16 C 1.39463 * 120.29778 * 0.02562 * 14 13 12 17 17 C 1.37680 * 120.57725 * 359.97438 * 16 14 13 18 18 C 1.37788 * 125.49255 * 185.63348 * 9 7 2 19 19 H 0.97004 * 120.00191 * 359.72609 * 1 2 3 20 20 H 1.07995 * 126.06833 * 180.02562 * 11 10 9 21 21 H 1.07999 * 120.20002 * 0.02562 * 13 12 11 22 22 H 0.97005 * 119.99547 * 359.97438 * 15 14 13 23 23 H 0.96992 * 120.00088 * 180.02562 * 15 14 13 24 24 H 1.08000 * 119.70843 * 179.97438 * 16 14 13 25 25 H 1.08003 * 119.99416 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.3842 2.1107 -1.3942 5 1 1.5052 2.6181 0.8082 6 1 3.5965 1.4107 0.5860 7 6 2.0084 -1.2030 -0.0058 8 1 3.0835 -1.2053 -0.1084 9 7 1.3297 -2.3861 0.1185 10 7 -0.0616 -2.5260 0.1400 11 6 -0.3840 -3.7835 0.2706 12 6 0.8528 -4.5581 0.3430 13 6 1.1353 -5.9206 0.4805 14 6 2.4508 -6.3451 0.5162 15 7 2.7395 -7.7064 0.6530 16 6 3.4911 -5.4216 0.4164 17 6 3.2240 -4.0778 0.2808 18 6 1.9077 -3.6314 0.2367 19 1 -0.4850 0.8401 0.0040 20 1 -1.3869 -4.1813 0.3161 21 1 0.3309 -6.6371 0.5575 22 1 2.0175 -8.3506 0.7230 23 1 3.6614 -8.0065 0.6787 24 1 4.5151 -5.7636 0.4458 25 1 4.0369 -3.3707 0.2047 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075937305.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:00 Heat of formation + Delta-G solvation = 69.720884 kcal Electronic energy + Delta-G solvation = -12308.765201 eV Core-core repulsion = 10094.607081 eV Total energy + Delta-G solvation = -2214.158120 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.50469 -38.36386 -35.34558 -34.17281 -32.67675 -30.49727 -28.61698 -26.57653 -23.68855 -22.31894 -22.08926 -19.21669 -17.94344 -17.48567 -17.22523 -16.24878 -15.50474 -15.45959 -14.90364 -14.40342 -13.97517 -13.73253 -13.38679 -13.16129 -12.79972 -12.72647 -12.09699 -11.63729 -11.35664 -10.99277 -10.85065 -10.16761 -9.16163 -8.42262 -7.96341 -5.99491 0.40728 1.09051 1.38168 1.47564 1.55611 2.12754 2.15484 2.70373 2.99761 3.32069 3.33137 4.12112 4.24486 4.41868 4.53394 4.78588 5.01575 5.09703 5.33376 5.38399 5.62113 5.67264 5.89434 6.10089 6.23756 6.75358 6.92744 7.33935 7.50533 7.66644 8.59297 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.060426 B = 0.009655 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.267329 B = 2899.278945 C = 3350.253396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C -0.009 4.009 3 Si 1.013 2.987 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.351 4.351 8 H 0.124 0.876 9 N -0.217 5.217 10 N -0.250 5.250 11 C -0.069 4.069 12 C -0.164 4.164 13 C -0.156 4.156 14 C 0.163 3.837 15 N -0.872 5.872 16 C -0.152 4.152 17 C -0.093 4.093 18 C -0.015 4.015 19 H 0.274 0.726 20 H 0.194 0.806 21 H 0.131 0.869 22 H 0.402 0.598 23 H 0.404 0.596 24 H 0.151 0.849 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -8.964 1.055 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.218 4.218 3 Si 0.832 3.168 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.481 4.481 8 H 0.142 0.858 9 N 0.008 4.992 10 N -0.074 5.074 11 C -0.254 4.254 12 C -0.175 4.175 13 C -0.182 4.182 14 C 0.059 3.941 15 N -0.416 5.416 16 C -0.176 4.176 17 C -0.116 4.116 18 C -0.133 4.133 19 H 0.083 0.917 20 H 0.210 0.790 21 H 0.149 0.851 22 H 0.231 0.769 23 H 0.233 0.767 24 H 0.169 0.831 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.782 -7.483 0.917 9.501 hybrid contribution 0.193 -0.167 0.041 0.258 sum 5.976 -7.650 0.958 9.754 Atomic orbital electron populations 1.70386 1.07958 1.28622 1.39705 1.26665 0.96569 1.03653 0.94951 0.84671 0.78378 0.74797 0.78954 1.19022 1.19888 1.17357 1.20257 0.93022 0.81669 1.53143 0.85816 1.44655 1.01840 1.04156 1.48534 1.77324 0.92523 1.18427 1.19093 1.25221 0.98612 0.90497 1.11071 1.19694 0.91830 0.94342 1.11645 1.19829 0.95395 0.92475 1.10544 1.17343 0.92147 0.85892 0.98751 1.42059 1.10741 1.02546 1.86293 1.20553 0.99029 0.90794 1.07188 1.19962 0.92138 0.96318 1.03136 1.19365 0.96066 0.86303 1.11552 0.91671 0.78973 0.85142 0.76927 0.76687 0.83122 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.23 11.79 21.65 0.26 -48.97 15 2 C -0.01 -0.51 5.49 84.92 0.47 -0.04 15 3 Si 1.01 40.84 29.56 68.60 2.03 42.87 15 4 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 6 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 7 C -0.35 -19.92 10.12 84.05 0.85 -19.07 15 8 H 0.12 6.39 7.79 -2.91 -0.02 6.37 15 9 N -0.22 -12.73 3.74 -183.91 -0.69 -13.42 15 10 N -0.25 -14.92 10.20 -52.84 -0.54 -15.45 15 11 C -0.07 -3.53 12.29 86.94 1.07 -2.46 15 12 C -0.16 -7.87 6.36 -20.22 -0.13 -8.00 15 13 C -0.16 -5.91 9.95 22.66 0.23 -5.69 15 14 C 0.16 5.28 6.75 38.17 0.26 5.54 15 15 N -0.87 -18.96 9.09 -51.32 -0.47 -19.42 15 16 C -0.15 -5.10 9.86 22.43 0.22 -4.88 15 17 C -0.09 -3.93 9.95 22.34 0.22 -3.71 15 18 C -0.01 -0.76 6.81 39.04 0.27 -0.49 15 19 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 20 H 0.19 8.09 8.06 -2.91 -0.02 8.07 15 21 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 22 H 0.40 7.16 8.84 -92.70 -0.82 6.35 15 23 H 0.40 6.65 8.84 -92.71 -0.82 5.83 15 24 H 0.15 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.12 4.70 8.01 -2.91 -0.02 4.67 15 Total: -1.00 -71.94 229.23 3.63 -68.31 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.40 Total: 24.89 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 3.45 Total: -38.80 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -1.44 Total: -97.27 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -71.94 3.63 -68.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075937305.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.031 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds