Wall clock time and date at job start Thu Apr 9 2020 14:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48496 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47214 * 299.99773 * 3 2 1 6 6 H 1.48497 * 109.47325 * 60.00109 * 3 2 1 7 7 C 1.37872 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00671 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47685 * 180.02562 * 9 7 2 11 11 C 1.40563 * 120.15045 * 89.99728 * 10 9 7 12 12 C 1.34939 * 120.46623 * 179.69934 * 11 10 9 13 13 N 1.36422 * 120.53107 * 0.26233 * 12 11 10 14 14 N 1.40005 * 133.62492 * 179.97438 * 13 12 11 15 15 N 1.28735 * 108.71254 * 180.02562 * 14 13 12 16 16 C 1.32504 * 110.65588 * 0.02562 * 15 14 13 17 17 C 1.37415 * 120.25317 * 0.02562 * 13 12 11 18 18 C 1.36026 * 120.15512 * 270.24413 * 10 9 7 19 19 H 0.97006 * 119.99745 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46825 * 59.99743 * 9 7 2 21 21 H 1.09004 * 109.46986 * 300.00789 * 9 7 2 22 22 H 1.08002 * 119.76959 * 359.97438 * 11 10 9 23 23 H 1.08002 * 119.73518 * 180.27710 * 12 11 10 24 24 H 1.08001 * 125.82895 * 180.02562 * 16 15 14 25 25 H 1.08002 * 120.42664 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6891 -4.1812 1.2149 12 6 3.5612 -5.2109 1.2224 13 7 4.0150 -5.7432 0.0511 14 7 4.8984 -6.7843 -0.2585 15 7 4.9865 -6.8841 -1.5389 16 6 4.2217 -5.9791 -2.1321 17 6 3.5879 -5.2346 -1.1519 18 6 2.6781 -4.1608 -1.1767 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.3377 -3.7695 2.1495 23 1 3.9026 -5.6170 2.1631 24 1 4.1111 -5.8455 -3.1980 25 1 2.3367 -3.7547 -2.1174 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261225297.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:58 Heat of formation + Delta-G solvation = 91.634512 kcal Electronic energy + Delta-G solvation = -12088.936406 eV Core-core repulsion = 9875.728532 eV Total energy + Delta-G solvation = -2213.207873 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.46346 -39.27246 -35.74524 -34.20335 -32.65373 -30.86779 -28.93765 -25.73148 -24.92931 -23.22171 -22.48396 -18.81784 -18.52132 -17.73228 -17.03319 -16.77577 -16.14862 -15.76229 -15.03053 -14.49718 -13.82745 -13.52422 -13.36346 -12.94856 -12.81045 -12.58000 -12.42121 -12.12942 -11.91126 -11.65628 -11.29151 -10.59728 -10.47946 -8.85222 -8.20557 -6.32779 -0.19640 -0.16217 1.22284 1.42157 1.45701 1.55034 1.56225 2.32677 2.49043 3.12698 3.27713 3.58251 3.73647 3.84908 4.17590 4.24208 4.60274 4.71894 4.95602 5.12979 5.22781 5.34077 5.45548 5.72037 5.74197 5.81621 6.12592 6.79612 7.17678 7.36660 8.88446 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.058328 B = 0.007781 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.930724 B = 3597.611869 C = 3681.163498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.016 4.016 11 C -0.115 4.115 12 C 0.083 3.917 13 N -0.288 5.288 14 N -0.169 5.169 15 N -0.246 5.246 16 C -0.086 4.086 17 C 0.071 3.929 18 C -0.117 4.117 19 H 0.266 0.734 20 H 0.019 0.981 21 H 0.025 0.975 22 H 0.180 0.820 23 H 0.207 0.793 24 H 0.219 0.781 25 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -5.852 0.803 7.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.022 4.022 11 C -0.137 4.137 12 C -0.042 4.042 13 N -0.059 5.059 14 N -0.142 5.142 15 N -0.102 5.102 16 C -0.255 4.255 17 C -0.054 4.054 18 C -0.138 4.138 19 H 0.075 0.925 20 H 0.037 0.963 21 H 0.043 0.957 22 H 0.197 0.803 23 H 0.224 0.776 24 H 0.236 0.764 25 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.894 -7.095 1.355 8.725 hybrid contribution -0.558 1.806 -0.370 1.927 sum 4.336 -5.288 0.986 6.909 Atomic orbital electron populations 1.70048 1.07421 1.27950 1.50953 1.25748 0.95595 1.02614 0.94596 0.85496 0.78961 0.79417 0.77773 1.19186 1.20606 1.20406 1.21318 0.93137 0.90844 1.51339 0.92541 1.18193 0.92535 0.89600 0.97846 1.20637 0.94828 0.93955 0.92730 1.21374 0.96858 0.94917 1.00561 1.22127 0.97348 0.95986 0.88732 1.48235 1.28052 1.22569 1.07016 1.82081 1.15895 1.08504 1.07691 1.73525 1.16497 1.19041 1.01128 1.23635 1.02620 0.97648 1.01586 1.20597 0.99541 0.98129 0.87167 1.20565 0.97603 0.94791 1.00824 0.92503 0.96250 0.95657 0.80260 0.77584 0.76408 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.71 13.29 21.45 0.28 -50.43 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.96 40.85 29.54 68.60 2.03 42.87 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.53 -26.47 9.09 25.60 0.23 -26.23 15 8 H 0.06 2.81 7.74 -2.91 -0.02 2.78 15 9 C 0.06 2.47 5.11 29.10 0.15 2.62 15 10 C -0.02 -0.56 5.08 -19.81 -0.10 -0.66 15 11 C -0.11 -3.36 9.67 22.08 0.21 -3.15 15 12 C 0.08 2.26 11.21 83.22 0.93 3.19 15 13 N -0.29 -9.60 3.95 -188.05 -0.74 -10.34 15 14 N -0.17 -6.17 13.86 37.02 0.51 -5.66 15 15 N -0.25 -8.76 12.24 -57.05 -0.70 -9.46 15 16 C -0.09 -2.68 12.02 84.64 1.02 -1.67 15 17 C 0.07 2.36 6.88 38.94 0.27 2.62 15 18 C -0.12 -3.92 9.75 22.37 0.22 -3.70 15 19 H 0.27 13.80 8.31 -92.70 -0.77 13.03 15 20 H 0.02 0.92 8.08 -2.39 -0.02 0.90 15 21 H 0.03 1.18 8.10 -2.38 -0.02 1.16 15 22 H 0.18 4.42 8.06 -2.91 -0.02 4.39 15 23 H 0.21 3.84 8.06 -2.91 -0.02 3.82 15 24 H 0.22 4.98 8.06 -2.91 -0.02 4.96 15 25 H 0.16 4.96 8.06 -2.91 -0.02 4.94 15 Total: -1.00 -61.23 232.93 5.97 -55.26 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.20 Total: 3.55 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 3.39 Total: -25.80 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -0.64 Total: -75.89 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -61.23 5.97 -55.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225297.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.897 kcal (2) G-P(sol) polarization free energy of solvation -61.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds