Wall clock time and date at job start Thu Apr 9 2020 14:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00180 * 2 1 4 4 H 1.48505 * 109.46913 * 270.00429 * 3 2 1 5 5 H 1.48496 * 109.47008 * 30.00005 * 3 2 1 6 6 H 1.48495 * 109.47042 * 150.00149 * 3 2 1 7 7 C 1.37880 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99795 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.46692 * 179.97438 * 9 7 2 11 11 N 1.30818 * 125.42516 * 270.03718 * 10 9 7 12 12 C 1.33471 * 109.90549 * 179.97438 * 11 10 9 13 13 C 1.37927 * 107.69267 * 0.02562 * 12 11 10 14 14 N 1.34126 * 133.32787 * 179.97438 * 13 12 11 15 15 C 1.31079 * 120.74701 * 180.02562 * 14 13 12 16 16 C 1.40576 * 120.46583 * 0.02562 * 15 14 13 17 17 C 1.35278 * 119.62273 * 0.17778 * 16 15 14 18 18 N 1.35585 * 125.41832 * 90.00351 * 10 9 7 19 19 H 0.96997 * 119.99871 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47315 * 59.99973 * 9 7 2 21 21 H 1.09000 * 109.47120 * 299.99686 * 9 7 2 22 22 H 1.08000 * 126.15346 * 180.02562 * 12 11 10 23 23 H 1.07992 * 119.76487 * 180.02562 * 15 14 13 24 24 H 1.07997 * 120.18966 * 179.97438 * 16 15 14 25 25 H 1.08008 * 120.48207 * 179.73547 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 7 4.2663 -3.3298 1.0651 12 6 4.6945 -4.5425 0.7080 13 6 4.7124 -4.5917 -0.6702 14 7 5.0493 -5.5439 -1.5528 15 6 4.9713 -5.3204 -2.8421 16 6 4.5325 -4.0750 -3.3243 17 6 4.1924 -3.1011 -2.4491 18 7 4.2754 -3.3559 -1.1059 19 1 -0.4850 0.8400 0.0004 20 1 3.8753 -0.6804 0.8888 21 1 3.8746 -0.6801 -0.8911 22 1 4.9762 -5.3415 1.3779 23 1 5.2462 -6.0985 -3.5386 24 1 4.4704 -3.8955 -4.3874 25 1 3.8575 -2.1377 -2.8043 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251912.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:02 Heat of formation + Delta-G solvation = 94.857806 kcal Electronic energy + Delta-G solvation = -12333.585606 eV Core-core repulsion = 10120.517506 eV Total energy + Delta-G solvation = -2213.068101 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.44024 -37.86483 -34.10165 -33.17605 -31.04272 -30.43677 -27.11642 -24.39986 -23.26327 -22.17113 -20.24193 -17.58837 -17.05043 -16.94670 -15.77674 -15.56279 -14.41699 -14.30112 -13.43399 -13.05759 -12.68336 -12.43725 -12.15590 -11.92538 -11.16944 -10.81052 -10.73499 -10.15236 -9.94218 -9.66413 -9.53900 -9.08150 -8.73480 -7.11609 -6.21240 -4.23564 0.95217 1.45034 2.91473 3.17393 3.27978 3.29564 3.55702 3.84393 4.27731 4.32893 4.75731 4.90092 5.04524 5.13803 5.20206 5.55521 5.82468 5.92516 6.01850 6.56402 6.58972 6.82315 7.00000 7.35407 7.49442 7.98890 8.31596 8.46391 8.81224 9.35323 10.91306 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.047395 B = 0.009894 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.641130 B = 2829.402102 C = 3065.423003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.522 4.522 8 H 0.074 0.926 9 C 0.064 3.936 10 C 0.249 3.751 11 N -0.451 5.451 12 C 0.006 3.994 13 C 0.117 3.883 14 N -0.433 5.433 15 C 0.126 3.874 16 C -0.218 4.218 17 C 0.127 3.873 18 N -0.410 5.410 19 H 0.267 0.733 20 H 0.058 0.942 21 H 0.029 0.971 22 H 0.181 0.819 23 H 0.167 0.833 24 H 0.154 0.846 25 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -5.035 -7.270 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.025 3.975 10 C -0.009 4.009 11 N -0.165 5.165 12 C -0.149 4.149 13 C -0.097 4.097 14 N -0.143 5.143 15 C -0.060 4.060 16 C -0.241 4.241 17 C -0.004 4.004 18 N -0.086 5.086 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.047 0.953 22 H 0.198 0.802 23 H 0.184 0.816 24 H 0.172 0.828 25 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.517 -5.292 -5.862 12.367 hybrid contribution 0.017 1.249 -1.294 1.798 sum 9.534 -4.043 -7.155 12.588 Atomic orbital electron populations 1.69881 1.06273 1.27306 1.49469 1.24927 0.94782 0.98951 0.94096 0.86829 0.80643 0.83555 0.78718 1.20017 1.20772 1.18630 1.20778 0.87520 0.95022 1.52739 0.90835 1.18343 0.97772 0.82658 0.98763 1.24122 1.01039 0.97549 0.78144 1.70188 1.15309 1.03350 1.27606 1.22291 1.07133 0.96575 0.88886 1.20685 1.09801 0.83313 0.95901 1.68024 1.14681 1.28812 1.02767 1.23054 0.95505 0.95997 0.91494 1.21627 1.06757 0.94662 1.01101 1.22211 0.95713 1.01456 0.80973 1.43863 1.44013 1.14163 1.06567 0.92264 0.92447 0.95262 0.80209 0.81554 0.82816 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.79 15 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.88 20.25 27.47 -169.99 -4.67 15.58 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.26 -5.80 6.54 56.52 0.37 -5.43 15 7 C -0.52 -14.53 9.65 -34.44 -0.33 -14.86 15 8 H 0.07 2.30 7.98 -52.49 -0.42 1.89 15 9 C 0.06 1.50 4.51 -29.03 -0.13 1.37 15 10 C 0.25 5.64 7.18 -154.65 -1.11 4.53 15 11 N -0.45 -10.27 11.19 -10.01 -0.11 -10.38 15 12 C 0.01 0.13 12.00 -16.95 -0.20 -0.08 15 13 C 0.12 2.30 7.91 -154.81 -1.22 1.07 15 14 N -0.43 -7.40 10.49 -12.12 -0.13 -7.53 15 15 C 0.13 1.66 11.27 -16.99 -0.19 1.47 15 16 C -0.22 -2.72 10.04 -39.76 -0.40 -3.12 15 17 C 0.13 2.01 10.96 -16.31 -0.18 1.84 15 18 N -0.41 -8.20 2.96 -59.75 -0.18 -8.38 15 19 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 20 H 0.06 1.37 7.20 -51.93 -0.37 0.99 15 21 H 0.03 0.63 7.56 -51.93 -0.39 0.23 15 22 H 0.18 2.94 8.06 -52.49 -0.42 2.51 15 23 H 0.17 1.46 8.06 -52.49 -0.42 1.03 15 24 H 0.15 1.27 8.06 -52.49 -0.42 0.84 15 25 H 0.17 2.43 8.06 -52.48 -0.42 2.01 15 LS Contribution 229.09 15.07 3.45 3.45 Total: -1.00 -32.73 229.09 -6.77 -39.50 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -2.04 Total: -0.68 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.87 Total: -5.77 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.36 Total: -52.08 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.73 -6.77 -39.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251912.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.361 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds