Wall clock time and date at job start Thu Apr 9 2020 14:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00180 * 2 1 4 4 H 1.48505 * 109.46913 * 270.00429 * 3 2 1 5 5 H 1.48496 * 109.47008 * 30.00005 * 3 2 1 6 6 H 1.48495 * 109.47042 * 150.00149 * 3 2 1 7 7 C 1.37880 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99795 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.46692 * 179.97438 * 9 7 2 11 11 N 1.30818 * 125.42516 * 270.03718 * 10 9 7 12 12 C 1.33471 * 109.90549 * 179.97438 * 11 10 9 13 13 C 1.37927 * 107.69267 * 0.02562 * 12 11 10 14 14 N 1.34126 * 133.32787 * 179.97438 * 13 12 11 15 15 C 1.31079 * 120.74701 * 180.02562 * 14 13 12 16 16 C 1.40576 * 120.46583 * 0.02562 * 15 14 13 17 17 C 1.35278 * 119.62273 * 0.17778 * 16 15 14 18 18 N 1.35585 * 125.41832 * 90.00351 * 10 9 7 19 19 H 0.96997 * 119.99871 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47315 * 59.99973 * 9 7 2 21 21 H 1.09000 * 109.47120 * 299.99686 * 9 7 2 22 22 H 1.08000 * 126.15346 * 180.02562 * 12 11 10 23 23 H 1.07992 * 119.76487 * 180.02562 * 15 14 13 24 24 H 1.07997 * 120.18966 * 179.97438 * 16 15 14 25 25 H 1.08008 * 120.48207 * 179.73547 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 7 4.2663 -3.3298 1.0651 12 6 4.6945 -4.5425 0.7080 13 6 4.7124 -4.5917 -0.6702 14 7 5.0493 -5.5439 -1.5528 15 6 4.9713 -5.3204 -2.8421 16 6 4.5325 -4.0750 -3.3243 17 6 4.1924 -3.1011 -2.4491 18 7 4.2754 -3.3559 -1.1059 19 1 -0.4850 0.8400 0.0004 20 1 3.8753 -0.6804 0.8888 21 1 3.8746 -0.6801 -0.8911 22 1 4.9762 -5.3415 1.3779 23 1 5.2462 -6.0985 -3.5386 24 1 4.4704 -3.8955 -4.3874 25 1 3.8575 -2.1377 -2.8043 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251912.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:02 Heat of formation + Delta-G solvation = 72.951224 kcal Electronic energy + Delta-G solvation = -12334.535547 eV Core-core repulsion = 10120.517506 eV Total energy + Delta-G solvation = -2214.018042 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.86344 -39.18814 -35.65385 -35.02624 -32.63303 -32.02870 -28.69914 -25.75476 -25.01287 -23.63564 -21.79258 -19.13472 -18.94902 -18.27784 -17.07897 -17.04077 -16.26558 -15.55632 -15.08990 -14.59350 -14.24287 -13.83868 -13.71580 -13.58404 -12.66740 -12.55646 -12.50015 -11.93616 -11.73185 -11.42090 -10.94003 -10.84088 -10.44473 -8.57999 -8.34894 -6.44681 -0.25458 0.13777 1.36402 1.41672 1.52770 1.54484 2.00822 2.32637 2.56783 2.98221 3.11468 3.56087 3.65441 3.70349 3.96557 4.31479 4.56391 4.68456 4.76412 4.86832 5.05267 5.28464 5.39159 5.60079 5.97353 6.16280 6.58181 6.67261 6.97480 7.18899 8.81505 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.047395 B = 0.009894 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.641130 B = 2829.402102 C = 3065.423003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.016 0.984 9 C 0.076 3.924 10 C 0.202 3.798 11 N -0.480 5.480 12 C -0.028 4.028 13 C 0.122 3.878 14 N -0.463 5.463 15 C 0.149 3.851 16 C -0.185 4.185 17 C 0.084 3.916 18 N -0.411 5.411 19 H 0.272 0.728 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.202 0.798 23 H 0.223 0.777 24 H 0.210 0.790 25 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.496 -5.000 -10.046 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.175 1.175 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.035 0.965 9 C 0.037 3.963 10 C -0.056 4.056 11 N -0.195 5.195 12 C -0.183 4.183 13 C -0.093 4.093 14 N -0.174 5.174 15 C -0.037 4.037 16 C -0.207 4.207 17 C -0.045 4.045 18 N -0.087 5.087 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.219 0.781 23 H 0.239 0.761 24 H 0.227 0.773 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.472 -5.264 -8.661 15.308 hybrid contribution -0.594 0.987 -0.675 1.335 sum 10.878 -4.277 -9.336 14.959 Atomic orbital electron populations 1.70047 1.08511 1.28741 1.51022 1.25952 0.95626 1.03423 0.93166 0.85611 0.79404 0.77369 0.80067 1.17535 1.20785 1.16923 1.20886 0.90002 0.93017 1.52842 0.96509 1.18076 0.94559 0.84242 0.99454 1.23687 1.04696 0.97767 0.79422 1.70020 1.15937 1.04723 1.28819 1.22661 1.08989 0.96515 0.90105 1.20986 1.08398 0.83535 0.96396 1.68195 1.16960 1.28048 1.04202 1.24197 0.91279 0.97359 0.90860 1.22351 1.02306 0.92843 1.03169 1.22905 0.97974 1.03737 0.79868 1.43917 1.43312 1.13859 1.07566 0.91940 0.92957 0.92689 0.78105 0.76080 0.77317 0.79578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.96 21.45 0.30 -57.81 15 2 C 0.02 0.95 5.47 84.66 0.46 1.41 15 3 Si 0.95 41.58 27.47 68.60 1.88 43.46 15 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.25 -10.01 6.54 99.48 0.65 -9.36 15 7 C -0.53 -30.68 9.65 25.60 0.25 -30.43 15 8 H 0.02 1.12 7.98 -2.91 -0.02 1.09 15 9 C 0.08 3.63 4.51 29.10 0.13 3.77 15 10 C 0.20 9.43 7.18 137.86 0.99 10.42 15 11 N -0.48 -22.89 11.19 -185.58 -2.08 -24.96 15 12 C -0.03 -1.15 12.00 84.37 1.01 -0.14 15 13 C 0.12 4.74 7.91 132.55 1.05 5.79 15 14 N -0.46 -14.65 10.49 -192.26 -2.02 -16.67 15 15 C 0.15 3.15 11.27 85.38 0.96 4.12 15 16 C -0.18 -3.66 10.04 22.16 0.22 -3.44 15 17 C 0.08 2.47 10.96 83.21 0.91 3.38 15 18 N -0.41 -16.36 2.96 -342.94 -1.01 -17.37 15 19 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 20 H 0.05 2.52 7.20 -2.39 -0.02 2.50 15 21 H 0.06 2.30 7.56 -2.39 -0.02 2.29 15 22 H 0.20 6.80 8.06 -2.91 -0.02 6.78 15 23 H 0.22 2.23 8.06 -2.91 -0.02 2.21 15 24 H 0.21 1.85 8.06 -2.91 -0.02 1.83 15 25 H 0.19 4.83 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -76.72 229.09 4.21 -72.51 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.14 Total: 5.97 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.99 Total: -5.13 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.81 Total: -116.81 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Total: -76.72 4.21 -72.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251912.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.461 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds