Wall clock time and date at job start Thu Apr 9 2020 14:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00074 * 3 2 1 5 5 H 1.48498 * 109.46774 * 30.00473 * 3 2 1 6 6 H 1.48509 * 109.46690 * 150.00117 * 3 2 1 7 7 C 1.37879 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00627 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99571 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47094 * 60.00765 * 9 7 2 11 11 F 1.39897 * 109.47564 * 300.00233 * 9 7 2 12 12 C 1.53002 * 109.46895 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47079 * 175.00419 * 12 9 7 14 14 C 1.47018 * 111.00106 * 198.69925 * 13 12 9 15 15 C 1.53093 * 109.25592 * 177.61055 * 14 13 12 16 16 O 1.43014 * 109.26197 * 56.85454 * 15 14 13 17 17 C 1.43023 * 113.73554 * 301.32693 * 16 15 14 18 18 C 1.47021 * 110.99632 * 75.06973 * 13 12 9 19 19 H 0.96993 * 120.00191 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47489 * 295.00635 * 12 9 7 21 21 H 1.09000 * 109.46807 * 55.00760 * 12 9 7 22 22 H 1.08993 * 109.50696 * 297.54609 * 14 13 12 23 23 H 1.08997 * 109.49785 * 57.68003 * 14 13 12 24 24 H 1.09006 * 109.51000 * 296.91695 * 15 14 13 25 25 H 1.09007 * 109.54262 * 176.81221 * 15 14 13 26 26 H 1.09003 * 109.50692 * 298.73163 * 17 16 15 27 27 H 1.09003 * 109.53757 * 178.62518 * 17 16 15 28 28 H 1.08996 * 109.50551 * 302.32383 * 18 13 12 29 29 H 1.09004 * 109.50625 * 62.45548 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 9 0.4471 -2.5736 1.1420 12 6 2.2453 -3.6621 -0.0018 13 7 1.5149 -4.9309 0.1188 14 6 2.4070 -6.0124 0.5615 15 6 1.5950 -7.2991 0.7310 16 8 0.9390 -7.6089 -0.5015 17 6 0.0618 -6.5774 -0.9619 18 6 0.8582 -5.2833 -1.1486 19 1 -0.4850 0.8400 0.0004 20 1 2.8109 -3.6556 -0.9336 21 1 2.9299 -3.5556 0.8396 22 1 3.1864 -6.1694 -0.1840 23 1 2.8625 -5.7413 1.5139 24 1 0.8502 -7.1590 1.5145 25 1 2.2613 -8.1174 1.0044 26 1 -0.7276 -6.4163 -0.2276 27 1 -0.3808 -6.8729 -1.9132 28 1 0.1834 -4.4801 -1.4444 29 1 1.6130 -5.4286 -1.9215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261309133.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:25 Heat of formation + Delta-G solvation = -97.504965 kcal Electronic energy + Delta-G solvation = -13619.725941 eV Core-core repulsion = 11071.087483 eV Total energy + Delta-G solvation = -2548.638458 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.106 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.33574 -39.16049 -35.48430 -32.82251 -30.96210 -29.75099 -26.63269 -23.96962 -23.70338 -20.66772 -19.90278 -16.92855 -15.95213 -15.88027 -14.98796 -14.88664 -14.81381 -14.20156 -13.84081 -13.60641 -12.88983 -12.55156 -12.16278 -11.53058 -11.34876 -11.16055 -10.98125 -10.88021 -10.59595 -10.39151 -10.28691 -9.62360 -9.08221 -8.72995 -8.54254 -7.84047 -6.13188 -4.29809 3.25288 3.31722 3.35290 3.98900 4.21840 4.39585 5.12718 5.20128 5.28759 5.31048 5.38093 5.51422 5.77062 5.80546 5.96980 6.01828 6.09559 6.14810 6.30674 6.43738 7.07518 7.25214 7.36119 7.46369 7.74745 7.86560 8.12154 8.74501 9.44391 10.94173 Molecular weight = 203.11amu Principal moments of inertia in cm(-1) A = 0.073331 B = 0.008038 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.739239 B = 3482.662021 C = 3600.886988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.076 3.924 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.569 4.569 8 H 0.064 0.936 9 C 0.230 3.770 10 H 0.030 0.970 11 F -0.227 7.227 12 C 0.036 3.964 13 N -0.532 5.532 14 C 0.018 3.982 15 C 0.065 3.935 16 O -0.392 6.392 17 C 0.065 3.935 18 C 0.018 3.982 19 H 0.265 0.735 20 H 0.038 0.962 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -10.354 -1.120 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.608 4.608 8 H 0.082 0.918 9 C 0.193 3.807 10 H 0.048 0.952 11 F -0.208 7.208 12 C -0.092 4.092 13 N -0.257 5.257 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.311 6.311 17 C -0.012 4.012 18 C -0.111 4.111 19 H 0.075 0.925 20 H 0.056 0.944 21 H 0.090 0.910 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.056 -10.357 -0.829 10.592 hybrid contribution 1.056 1.170 -0.440 1.636 sum 3.111 -9.187 -1.270 9.782 Atomic orbital electron populations 1.70010 1.06154 1.27196 1.47420 1.25052 0.94846 0.99640 0.93440 0.86474 0.79890 0.82684 0.78214 1.20386 1.20920 1.19612 1.21462 0.93587 0.90593 1.55110 0.91761 1.18863 0.87092 0.91408 0.83311 0.95189 1.92697 1.76218 1.97302 1.54624 1.22948 0.97134 0.88744 1.00332 1.62238 1.31488 1.02724 1.29295 1.22762 0.94831 0.92433 1.01030 1.22641 0.95838 0.96083 0.86647 1.87911 1.60953 1.42243 1.39978 1.22675 0.92014 0.86678 0.99856 1.22803 0.98857 0.98425 0.90997 0.92515 0.94368 0.90956 0.94653 0.89895 0.92306 0.88995 0.92175 0.88805 0.89099 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 12.95 55.43 0.72 -25.35 15 2 C 0.08 2.16 5.42 -17.82 -0.10 2.06 15 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.57 -16.02 8.86 -34.44 -0.30 -16.33 15 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 15 9 C 0.23 6.05 3.15 -27.88 -0.09 5.97 15 10 H 0.03 0.83 7.05 -51.93 -0.37 0.46 15 11 F -0.23 -6.59 16.46 2.25 0.04 -6.55 15 12 C 0.04 0.77 4.71 -3.82 -0.02 0.75 15 13 N -0.53 -10.11 4.50 -234.30 -1.06 -11.17 15 14 C 0.02 0.28 5.60 -3.71 -0.02 0.26 15 15 C 0.06 0.89 7.01 37.21 0.26 1.15 15 16 O -0.39 -6.01 10.83 -35.23 -0.38 -6.39 15 17 C 0.06 0.95 7.01 37.21 0.26 1.21 15 18 C 0.02 0.30 5.47 -3.71 -0.02 0.28 15 19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.04 0.78 8.00 -51.93 -0.42 0.36 15 21 H 0.07 1.53 7.87 -51.93 -0.41 1.12 15 22 H 0.04 0.54 8.14 -51.93 -0.42 0.11 15 23 H 0.08 1.21 8.02 -51.93 -0.42 0.80 15 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.09 1.65 6.88 -51.93 -0.36 1.30 15 29 H 0.04 0.61 8.13 -51.93 -0.42 0.18 15 LS Contribution 245.56 15.07 3.70 3.70 Total: -1.00 -31.30 245.56 -6.07 -37.37 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.04 Total: -3.23 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.03 Total: -4.65 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.34 Total: -36.52 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.38 Total: -6.39 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.04 Total: -6.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.30 -6.07 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309133.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.138 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds