Wall clock time and date at job start Thu Apr 9 2020 14:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31456 * 1 3 3 Si 1.86794 * 120.00087 * 2 1 4 4 H 1.48503 * 109.47104 * 89.99572 * 3 2 1 5 5 H 1.48495 * 109.47553 * 209.99738 * 3 2 1 6 6 H 1.48500 * 109.47051 * 329.99757 * 3 2 1 7 7 C 1.38839 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99462 * 152.12330 * 7 2 1 9 9 N 1.37275 * 120.00263 * 332.12643 * 7 2 1 10 10 C 1.34628 * 125.80147 * 330.19484 * 9 7 2 11 11 O 1.21649 * 125.15717 * 0.02562 * 10 9 7 12 12 N 1.34639 * 109.68806 * 179.86570 * 10 9 7 13 13 H 0.97007 * 125.82944 * 180.20070 * 12 10 9 14 14 C 1.39308 * 108.33743 * 0.40316 * 12 10 9 15 15 C 1.38618 * 133.36030 * 179.73605 * 14 12 10 16 16 C 1.38142 * 119.85290 * 180.02562 * 15 14 12 17 17 C 1.38462 * 120.29788 * 0.02562 * 16 15 14 18 18 C 1.38087 * 120.29168 * 359.97438 * 17 16 15 19 19 C 1.38740 * 119.84010 * 0.02562 * 18 17 16 20 20 H 0.97005 * 120.00005 * 174.58711 * 1 2 3 21 21 H 1.08005 * 120.07229 * 0.04632 * 15 14 12 22 22 H 1.08003 * 119.85017 * 180.02562 * 16 15 14 23 23 H 1.07997 * 119.85171 * 180.02562 * 17 16 15 24 24 H 1.08002 * 120.07757 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4960 2.0464 1.4001 5 1 3.5461 1.4402 -0.6999 6 1 1.4460 2.6526 -0.7001 7 6 2.0087 -1.2024 0.0005 8 1 2.9947 -1.2568 -0.4368 9 7 1.4418 -2.3220 0.5568 10 6 0.5634 -2.3360 1.5770 11 8 0.1444 -1.3505 2.1541 12 7 0.2162 -3.6059 1.8593 13 1 -0.4047 -3.8845 2.5505 14 6 0.9046 -4.4515 0.9923 15 6 0.9396 -5.8281 0.8336 16 6 1.7432 -6.3878 -0.1408 17 6 2.5142 -5.5798 -0.9593 18 6 2.4863 -4.2074 -0.8092 19 6 1.6825 -3.6359 0.1666 20 1 -0.4850 -0.8363 -0.0792 21 1 0.3397 -6.4617 1.4701 22 1 1.7701 -7.4603 -0.2647 23 1 3.1395 -6.0250 -1.7191 24 1 3.0894 -3.5806 -1.4493 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038810272.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:20 Heat of formation + Delta-G solvation = 1.235278 kcal Electronic energy + Delta-G solvation = -12842.949778 eV Core-core repulsion = 10528.103238 eV Total energy + Delta-G solvation = -2314.846540 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.064 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.18117 -39.06407 -36.64205 -36.37075 -33.66770 -30.92211 -29.61016 -27.27409 -23.48223 -23.14986 -22.91370 -19.76731 -18.73761 -18.48057 -17.18322 -16.67009 -16.47036 -15.66553 -15.06699 -14.86450 -14.73783 -14.06399 -13.77679 -12.99810 -12.88284 -12.30846 -12.01699 -11.92587 -11.78581 -11.57689 -11.30243 -10.54997 -9.35415 -9.02905 -8.65061 -6.31657 0.41105 0.63007 1.45887 1.57018 1.75859 1.84331 2.21079 2.44654 2.86322 2.95811 3.11864 3.82446 4.27867 4.49935 4.53082 4.59201 4.71289 5.19919 5.21340 5.48485 5.66526 5.69571 5.82689 6.03239 6.08724 6.54800 6.78698 7.14860 7.78204 8.33917 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.049636 B = 0.012221 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.975663 B = 2290.520901 C = 2728.709761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C -0.018 4.018 3 Si 1.134 2.866 4 H -0.285 1.285 5 H -0.246 1.246 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.102 0.898 9 N -0.384 5.384 10 C 0.599 3.401 11 O -0.611 6.611 12 N -0.636 5.636 13 H 0.434 0.566 14 C 0.042 3.958 15 C -0.100 4.100 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.126 4.126 19 C 0.043 3.957 20 H 0.255 0.745 21 H 0.155 0.845 22 H 0.171 0.829 23 H 0.162 0.838 24 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -12.611 -1.962 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.226 4.226 3 Si 0.951 3.049 4 H -0.211 1.211 5 H -0.169 1.169 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.119 0.881 9 N -0.091 5.091 10 C 0.303 3.697 11 O -0.493 6.493 12 N -0.282 5.282 13 H 0.276 0.724 14 C -0.062 4.062 15 C -0.121 4.121 16 C -0.141 4.141 17 C -0.125 4.125 18 C -0.148 4.148 19 C -0.062 4.062 20 H 0.064 0.936 21 H 0.173 0.827 22 H 0.189 0.811 23 H 0.179 0.821 24 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.329 -10.124 -1.591 11.125 hybrid contribution -0.545 -1.373 0.507 1.562 sum 3.784 -11.497 -1.084 12.152 Atomic orbital electron populations 1.70649 1.08801 1.30288 1.37783 1.28116 0.95791 1.06456 0.92250 0.82763 0.74884 0.69644 0.77568 1.21120 1.16950 1.20006 1.20390 1.03692 0.88020 1.46367 0.88066 1.41068 1.36997 1.05264 1.25738 1.16587 0.85788 0.83657 0.83671 1.90891 1.63481 1.36155 1.58777 1.42739 1.44663 1.04970 1.35815 0.72436 1.18520 0.98737 0.93604 0.95324 1.20415 1.02077 0.88394 1.01210 1.21216 0.96560 1.01381 0.94956 1.21199 1.00132 0.90592 1.00531 1.20300 1.00327 0.96457 0.97686 1.19102 1.02413 0.84208 1.00452 0.93569 0.82691 0.81117 0.82068 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -54.92 12.11 21.64 0.26 -54.66 14 2 C -0.02 -1.07 4.62 84.89 0.39 -0.68 14 3 Si 1.13 51.19 30.00 68.60 2.06 53.25 14 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 14 5 H -0.25 -9.54 7.11 99.48 0.71 -8.83 14 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 14 7 C -0.46 -27.00 9.75 83.98 0.82 -26.18 14 8 H 0.10 5.59 7.97 -2.91 -0.02 5.56 14 9 N -0.38 -21.74 2.70 -474.60 -1.28 -23.02 14 10 C 0.60 34.31 7.59 179.14 1.36 35.67 14 11 O -0.61 -40.01 15.34 -4.18 -0.06 -40.07 14 12 N -0.64 -27.95 6.15 -317.44 -1.95 -29.90 14 13 H 0.43 15.55 8.96 -92.70 -0.83 14.71 14 14 C 0.04 1.66 7.26 38.40 0.28 1.93 14 15 C -0.10 -2.77 10.07 22.34 0.22 -2.55 14 16 C -0.12 -2.78 10.03 22.30 0.22 -2.56 14 17 C -0.10 -2.76 10.03 22.29 0.22 -2.53 14 18 C -0.13 -4.71 9.98 22.35 0.22 -4.48 14 19 C 0.04 2.01 6.76 38.46 0.26 2.27 14 20 H 0.25 17.29 7.14 -92.70 -0.66 16.63 14 21 H 0.16 3.12 8.06 -2.91 -0.02 3.09 14 22 H 0.17 2.32 8.06 -2.91 -0.02 2.30 14 23 H 0.16 2.92 8.06 -2.91 -0.02 2.90 14 24 H 0.12 4.34 8.06 -2.91 -0.02 4.32 14 Total: -1.00 -79.92 220.02 3.54 -76.38 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.51 Total: 17.14 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.00 Total: 0.89 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -2.97 Total: -107.58 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.06 Total: -40.07 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.06 Total: 53.25 kcal Total: -79.92 3.54 -76.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038810272.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.613 kcal (2) G-P(sol) polarization free energy of solvation -79.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds