Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30550 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47290 * 274.98667 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98601 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98328 * 3 2 1 7 7 C 1.40427 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99745 * 186.02995 * 7 2 1 9 9 C 1.39931 * 120.00272 * 6.02716 * 7 2 1 10 10 N 1.32401 * 125.12331 * 174.12336 * 9 7 2 11 11 C 1.34170 * 108.90380 * 180.02562 * 10 9 7 12 12 C 1.40301 * 133.45977 * 180.02562 * 11 10 9 13 13 C 1.38027 * 119.63256 * 179.97438 * 12 11 10 14 14 N 1.39792 * 119.82488 * 180.02562 * 13 12 11 15 15 C 1.39664 * 120.34850 * 359.97438 * 13 12 11 16 16 C 1.37968 * 120.52841 * 359.97438 * 15 13 12 17 17 C 1.38524 * 120.03516 * 0.03983 * 16 15 13 18 18 O 1.35071 * 125.12443 * 353.81755 * 9 7 2 19 19 H 0.97000 * 120.00409 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.18129 * 359.94909 * 12 11 10 21 21 H 0.96995 * 120.00362 * 359.97438 * 14 13 12 22 22 H 0.97005 * 120.00016 * 180.02562 * 14 13 12 23 23 H 1.07999 * 119.73695 * 179.97438 * 15 13 12 24 24 H 1.08001 * 119.97983 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.3816 2.1073 -1.3948 5 1 1.4935 2.6199 0.8028 6 1 3.5857 1.4121 0.5921 7 6 2.0076 -1.2162 -0.0005 8 1 3.0831 -1.2188 0.0977 9 6 1.3138 -2.4246 -0.1283 10 7 1.8765 -3.6167 -0.2518 11 6 0.9122 -4.5443 -0.3514 12 6 0.9268 -5.9397 -0.4970 13 6 -0.2658 -6.6305 -0.5720 14 7 -0.2559 -8.0209 -0.7166 15 6 -1.4822 -5.9479 -0.5029 16 6 -1.5089 -4.5760 -0.3587 17 6 -0.3232 -3.8638 -0.2818 18 8 -0.0310 -2.5513 -0.1384 19 1 -0.4851 0.8400 0.0004 20 1 1.8661 -6.4702 -0.5507 21 1 0.5874 -8.4976 -0.7644 22 1 -1.0926 -8.5089 -0.7699 23 1 -2.4095 -6.4983 -0.5630 24 1 -2.4546 -4.0572 -0.3058 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059703621.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = 15.286526 kcal Electronic energy + Delta-G solvation = -12360.082859 eV Core-core repulsion = 10045.845627 eV Total energy + Delta-G solvation = -2314.237233 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.064 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.10022 -37.28298 -34.06975 -33.07688 -32.55501 -29.15776 -27.88624 -25.86991 -21.82870 -21.19928 -20.23132 -18.09587 -16.71718 -16.11394 -15.52289 -15.34554 -14.73025 -14.07977 -13.11558 -12.96586 -12.59821 -12.02145 -11.76367 -11.58536 -11.50592 -11.17034 -10.53372 -10.16831 -10.05102 -9.74684 -9.20423 -8.56867 -7.34955 -7.18415 -6.68423 -4.94596 2.07739 2.66950 2.87151 2.91082 2.97967 3.66644 3.81334 4.37688 4.58969 4.77617 5.21914 5.67056 5.93882 6.15331 6.31721 6.51454 6.71870 6.77868 7.09865 7.17541 7.40954 7.57172 7.79054 7.99868 8.14344 8.29693 8.34094 8.47870 9.65156 9.83448 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.088523 B = 0.008411 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.224925 B = 3328.170141 C = 3631.506777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.066 3.934 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.408 4.408 8 H 0.119 0.881 9 C 0.379 3.621 10 N -0.630 5.630 11 C 0.142 3.858 12 C -0.219 4.219 13 C 0.217 3.783 14 N -0.887 5.887 15 C -0.242 4.242 16 C -0.035 4.035 17 C -0.106 4.106 18 O -0.201 6.201 19 H 0.292 0.708 20 H 0.110 0.890 21 H 0.391 0.609 22 H 0.390 0.610 23 H 0.112 0.888 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 -3.880 -0.590 4.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.160 4.160 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.441 4.441 8 H 0.137 0.863 9 C 0.199 3.801 10 N -0.367 5.367 11 C 0.019 3.981 12 C -0.246 4.246 13 C 0.114 3.886 14 N -0.429 5.429 15 C -0.265 4.265 16 C -0.055 4.055 17 C -0.158 4.158 18 O -0.097 6.097 19 H 0.104 0.896 20 H 0.128 0.872 21 H 0.218 0.782 22 H 0.217 0.783 23 H 0.130 0.870 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.483 -3.659 -0.565 3.988 hybrid contribution -0.552 0.415 -0.047 0.692 sum -2.034 -3.243 -0.613 3.877 Atomic orbital electron populations 1.69689 1.07926 1.30859 1.29238 1.26330 0.95174 1.02633 0.91839 0.85778 0.80288 0.78230 0.79609 1.18783 1.19594 1.17726 1.18777 0.95737 0.85793 1.43807 0.86314 1.22310 0.76518 0.93655 0.87641 1.71031 1.30018 0.97628 1.38028 1.19700 0.89513 0.93999 0.94923 1.19142 0.95725 0.90777 1.18932 1.17224 0.93214 0.83307 0.94817 1.42254 1.09676 1.04211 1.86736 1.19860 0.95319 0.92948 1.18386 1.19267 0.94078 0.92250 0.99920 1.20474 0.96780 0.84030 1.14533 1.85020 1.25988 1.22152 1.76526 0.89629 0.87224 0.78232 0.78316 0.86970 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.12 11.96 55.57 0.66 -18.46 14 2 C 0.07 1.60 5.50 -17.27 -0.09 1.51 14 3 Si 0.94 17.43 29.57 -169.99 -5.03 12.41 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 6 H -0.25 -4.60 7.11 56.52 0.40 -4.20 14 7 C -0.41 -10.87 9.45 -38.12 -0.36 -11.23 14 8 H 0.12 2.97 7.86 -52.49 -0.41 2.55 14 9 C 0.38 11.03 7.60 -16.67 -0.13 10.91 14 10 N -0.63 -18.27 11.35 -11.09 -0.13 -18.39 14 11 C 0.14 3.82 7.22 -84.94 -0.61 3.21 14 12 C -0.22 -4.97 9.95 -38.88 -0.39 -5.35 14 13 C 0.22 4.21 6.74 -83.77 -0.56 3.64 14 14 N -0.89 -12.54 9.09 32.41 0.29 -12.25 14 15 C -0.24 -4.69 9.88 -39.15 -0.39 -5.07 14 16 C -0.04 -0.79 10.05 -39.58 -0.40 -1.19 14 17 C -0.11 -2.83 7.43 -38.34 -0.28 -3.11 14 18 O -0.20 -5.86 9.03 0.94 0.01 -5.86 14 19 H 0.29 6.53 8.29 -40.82 -0.34 6.19 14 20 H 0.11 2.31 8.06 -52.48 -0.42 1.88 14 21 H 0.39 4.80 8.83 -40.82 -0.36 4.44 14 22 H 0.39 4.45 8.84 -40.82 -0.36 4.09 14 23 H 0.11 1.78 8.06 -52.49 -0.42 1.36 14 24 H 0.11 2.23 8.06 -52.49 -0.42 1.80 14 LS Contribution 224.12 15.07 3.38 3.38 Total: -1.00 -31.02 224.12 -5.56 -36.58 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -1.54 Total: 9.28 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.22 Total: -6.69 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.83 Total: -49.10 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: 0.01 Total: -5.86 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.02 -5.56 -36.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059703621.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.868 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds