Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30550 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47290 * 274.98667 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98601 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98328 * 3 2 1 7 7 C 1.40427 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99745 * 186.02995 * 7 2 1 9 9 C 1.39931 * 120.00272 * 6.02716 * 7 2 1 10 10 N 1.32401 * 125.12331 * 174.12336 * 9 7 2 11 11 C 1.34170 * 108.90380 * 180.02562 * 10 9 7 12 12 C 1.40301 * 133.45977 * 180.02562 * 11 10 9 13 13 C 1.38027 * 119.63256 * 179.97438 * 12 11 10 14 14 N 1.39792 * 119.82488 * 180.02562 * 13 12 11 15 15 C 1.39664 * 120.34850 * 359.97438 * 13 12 11 16 16 C 1.37968 * 120.52841 * 359.97438 * 15 13 12 17 17 C 1.38524 * 120.03516 * 0.03983 * 16 15 13 18 18 O 1.35071 * 125.12443 * 353.81755 * 9 7 2 19 19 H 0.97000 * 120.00409 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.18129 * 359.94909 * 12 11 10 21 21 H 0.96995 * 120.00362 * 359.97438 * 14 13 12 22 22 H 0.97005 * 120.00016 * 180.02562 * 14 13 12 23 23 H 1.07999 * 119.73695 * 179.97438 * 15 13 12 24 24 H 1.08001 * 119.97983 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.3816 2.1073 -1.3948 5 1 1.4935 2.6199 0.8028 6 1 3.5857 1.4121 0.5921 7 6 2.0076 -1.2162 -0.0005 8 1 3.0831 -1.2188 0.0977 9 6 1.3138 -2.4246 -0.1283 10 7 1.8765 -3.6167 -0.2518 11 6 0.9122 -4.5443 -0.3514 12 6 0.9268 -5.9397 -0.4970 13 6 -0.2658 -6.6305 -0.5720 14 7 -0.2559 -8.0209 -0.7166 15 6 -1.4822 -5.9479 -0.5029 16 6 -1.5089 -4.5760 -0.3587 17 6 -0.3232 -3.8638 -0.2818 18 8 -0.0310 -2.5513 -0.1384 19 1 -0.4851 0.8400 0.0004 20 1 1.8661 -6.4702 -0.5507 21 1 0.5874 -8.4976 -0.7644 22 1 -1.0926 -8.5089 -0.7699 23 1 -2.4095 -6.4983 -0.5630 24 1 -2.4546 -4.0572 -0.3058 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059703621.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = -9.749862 kcal Electronic energy + Delta-G solvation = -12361.168518 eV Core-core repulsion = 10045.845627 eV Total energy + Delta-G solvation = -2315.322892 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.064 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.04100 -38.96220 -35.91132 -34.94079 -34.24790 -31.02015 -29.63902 -27.65762 -23.65431 -22.97915 -22.16240 -19.98456 -18.43966 -17.72835 -17.17745 -17.00328 -16.76333 -15.70116 -14.89757 -14.64866 -14.26177 -13.65913 -13.48210 -13.30407 -13.18290 -12.96733 -12.01297 -11.98983 -11.95758 -11.44364 -10.86410 -10.60114 -9.23455 -8.99668 -8.28378 -6.92784 0.28726 0.88472 1.36744 1.37796 1.58753 2.01219 2.12753 2.62122 2.93464 3.11336 3.27282 3.91657 4.27977 4.48522 4.58794 4.80255 4.89196 5.03837 5.36706 5.45466 5.70518 5.77627 5.97720 6.05060 6.33771 6.47014 6.74000 7.20866 7.66174 8.04147 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.088523 B = 0.008411 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.224925 B = 3328.170141 C = 3631.506777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.024 3.976 3 Si 1.025 2.975 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.247 1.247 7 C -0.436 4.436 8 H 0.123 0.877 9 C 0.343 3.657 10 N -0.665 5.665 11 C 0.104 3.896 12 C -0.236 4.236 13 C 0.236 3.764 14 N -0.861 5.861 15 C -0.221 4.221 16 C -0.039 4.039 17 C -0.159 4.159 18 O -0.224 6.224 19 H 0.305 0.695 20 H 0.119 0.881 21 H 0.404 0.596 22 H 0.410 0.590 23 H 0.162 0.838 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -4.822 -0.812 5.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.198 4.198 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.179 1.179 6 H -0.170 1.170 7 C -0.470 4.470 8 H 0.141 0.859 9 C 0.163 3.837 10 N -0.404 5.404 11 C -0.017 4.017 12 C -0.264 4.264 13 C 0.130 3.870 14 N -0.403 5.403 15 C -0.244 4.244 16 C -0.058 4.058 17 C -0.211 4.211 18 O -0.121 6.121 19 H 0.117 0.883 20 H 0.137 0.863 21 H 0.233 0.767 22 H 0.241 0.759 23 H 0.180 0.820 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.458 -4.715 -0.794 5.377 hybrid contribution -0.398 0.413 -0.002 0.574 sum -2.857 -4.302 -0.796 5.225 Atomic orbital electron populations 1.69737 1.09808 1.32798 1.29158 1.27506 0.95990 1.05999 0.90256 0.84575 0.78793 0.72458 0.80143 1.17835 1.17943 1.16995 1.19234 0.96242 0.86558 1.44922 0.85899 1.22878 0.76994 0.94621 0.89185 1.70924 1.31310 0.98367 1.39804 1.20176 0.89411 0.95472 0.96642 1.19388 0.97682 0.89447 1.19851 1.17295 0.92101 0.85444 0.92188 1.42165 1.11717 1.01976 1.84439 1.20421 0.97220 0.91911 1.14799 1.19746 0.93495 0.93496 0.99069 1.21107 0.98471 0.83475 1.18003 1.84919 1.26080 1.23848 1.77292 0.88328 0.86335 0.76694 0.75942 0.82048 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.31 11.96 21.91 0.26 -41.05 14 2 C 0.02 1.21 5.50 85.42 0.47 1.68 14 3 Si 1.02 35.57 29.57 68.60 2.03 37.59 14 4 H -0.25 -8.42 7.11 99.48 0.71 -7.71 14 5 H -0.26 -8.16 7.11 99.48 0.71 -7.46 14 6 H -0.25 -8.21 7.11 99.48 0.71 -7.50 14 7 C -0.44 -24.42 9.45 23.21 0.22 -24.20 14 8 H 0.12 6.46 7.86 -2.91 -0.02 6.44 14 9 C 0.34 21.24 7.60 85.02 0.65 21.88 14 10 N -0.67 -40.84 11.35 -302.12 -3.43 -44.27 14 11 C 0.10 5.82 7.22 40.02 0.29 6.11 14 12 C -0.24 -10.64 9.95 22.72 0.23 -10.42 14 13 C 0.24 8.43 6.74 38.17 0.26 8.69 14 14 N -0.86 -20.34 9.09 -51.37 -0.47 -20.80 14 15 C -0.22 -7.75 9.88 22.55 0.22 -7.53 14 16 C -0.04 -1.68 10.05 22.27 0.22 -1.46 14 17 C -0.16 -8.81 7.43 23.07 0.17 -8.63 14 18 O -0.22 -13.86 9.03 -19.54 -0.18 -14.04 14 19 H 0.31 13.81 8.29 -92.71 -0.77 13.04 14 20 H 0.12 4.95 8.06 -2.91 -0.02 4.93 14 21 H 0.40 8.18 8.83 -92.71 -0.82 7.37 14 22 H 0.41 7.00 8.84 -92.70 -0.82 6.18 14 23 H 0.16 4.11 8.06 -2.91 -0.02 4.09 14 24 H 0.13 5.08 8.06 -2.91 -0.02 5.05 14 Total: -1.00 -72.58 224.12 0.56 -72.01 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.38 Total: 24.43 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 2.72 Total: -13.88 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.63 Total: -106.12 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.18 Total: -14.04 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.59 kcal Total: -72.58 0.56 -72.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059703621.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.263 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds