Wall clock time and date at job start Thu Apr 9 2020 14:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99872 * 2 1 4 4 H 1.48502 * 109.46947 * 270.00189 * 3 2 1 5 5 H 1.48498 * 109.47122 * 30.00168 * 3 2 1 6 6 H 1.48500 * 109.46817 * 150.00453 * 3 2 1 7 7 C 1.37878 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99858 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99921 * 179.97438 * 7 2 1 10 10 H 1.09004 * 110.39114 * 57.76381 * 9 7 2 11 11 S 1.83398 * 110.33787 * 295.54075 * 9 7 2 12 12 C 1.83996 * 95.85080 * 221.38031 * 11 9 7 13 13 C 1.55157 * 100.90726 * 35.34975 * 12 11 9 14 14 H 1.09003 * 109.59952 * 198.63389 * 13 12 11 15 15 O 1.42891 * 109.60289 * 78.49352 * 13 12 11 16 16 C 1.52939 * 108.96202 * 318.55937 * 13 12 11 17 17 H 1.09002 * 108.88952 * 269.30830 * 16 13 12 18 18 C 1.53004 * 108.88715 * 150.75389 * 16 13 12 19 19 O 1.42901 * 109.47105 * 64.27767 * 18 16 13 20 20 H 0.96997 * 120.00233 * 359.97438 * 1 2 3 21 21 H 1.09007 * 111.12900 * 277.44064 * 12 11 9 22 22 H 1.08999 * 111.16905 * 153.27939 * 12 11 9 23 23 H 0.96706 * 114.00206 * 60.46339 * 15 13 12 24 24 H 1.08997 * 109.47276 * 184.28221 * 18 16 13 25 25 H 1.09003 * 109.46855 * 304.27856 * 18 16 13 26 26 H 0.96692 * 114.00600 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8916 -0.6492 0.8631 11 16 4.1483 -0.4522 -1.5528 12 6 5.5012 -1.6739 -1.8033 13 6 4.8304 -2.9679 -1.2715 14 1 5.5960 -3.7099 -1.0445 15 8 3.9415 -3.4889 -2.2616 16 6 4.0459 -2.6352 -0.0015 17 1 4.6978 -2.7701 0.8615 18 6 2.8633 -3.5989 0.1168 19 8 3.3501 -4.9317 0.2861 20 1 -0.4850 0.8400 0.0004 21 1 6.3792 -1.4146 -1.2116 22 1 5.7557 -1.7684 -2.8589 23 1 4.3737 -3.7216 -3.0948 24 1 2.2541 -3.3225 0.9773 25 1 2.2588 -3.5451 -0.7886 26 1 2.6536 -5.5974 0.3686 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060166271.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:41 Heat of formation + Delta-G solvation = -93.679645 kcal Electronic energy + Delta-G solvation = -12059.809514 eV Core-core repulsion = 9843.998354 eV Total energy + Delta-G solvation = -2215.811160 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 204.061 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.10146 -35.63278 -33.87991 -32.15498 -29.40683 -26.65577 -23.71458 -22.42199 -18.95367 -17.51071 -17.07964 -16.03879 -15.37781 -14.63296 -14.29584 -13.87045 -13.57307 -12.98472 -12.63184 -11.96466 -11.80525 -11.62892 -11.20027 -10.72177 -10.43195 -10.13905 -9.96384 -9.57831 -9.18238 -9.09457 -9.00084 -8.47567 -6.56509 -6.32358 -4.26934 2.71232 3.24294 3.46121 3.49267 3.67013 4.34079 4.75101 5.00627 5.14302 5.25768 5.41184 5.61622 5.80748 5.97396 6.02383 6.31592 6.41433 6.64656 6.78655 6.97850 7.36744 8.14223 8.19156 8.28063 8.68126 9.26841 10.74849 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.016643 C = 0.012900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.330826 B = 1682.029739 C = 2170.003674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.090 3.910 3 Si 0.857 3.143 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.097 3.903 10 H 0.059 0.941 11 S -0.394 6.394 12 C -0.109 4.109 13 C 0.122 3.878 14 H 0.056 0.944 15 O -0.537 6.537 16 C -0.070 4.070 17 H 0.072 0.928 18 C 0.099 3.901 19 O -0.591 6.591 20 H 0.271 0.729 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.363 0.637 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.943 -5.418 -0.874 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.120 4.120 3 Si 0.684 3.316 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.530 4.530 8 H 0.120 0.880 9 C -0.026 4.026 10 H 0.077 0.923 11 S -0.164 6.164 12 C -0.257 4.257 13 C 0.061 3.939 14 H 0.073 0.927 15 O -0.340 6.340 16 C -0.091 4.091 17 H 0.091 0.909 18 C 0.022 3.978 19 O -0.396 6.396 20 H 0.081 0.919 21 H 0.097 0.903 22 H 0.107 0.893 23 H 0.208 0.792 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.651 -3.901 -1.106 8.660 hybrid contribution 0.707 -0.189 0.048 0.734 sum 8.359 -4.091 -1.058 9.366 Atomic orbital electron populations 1.69870 1.06505 1.27977 1.46127 1.25057 0.94719 0.99534 0.92671 0.86823 0.80866 0.83481 0.80472 1.18314 1.20897 1.17702 1.21245 0.87219 0.95730 1.48778 0.88043 1.21796 0.99324 0.91411 0.90116 0.92286 1.88367 1.37905 1.45807 1.44367 1.24865 0.99490 0.98058 1.03322 1.22317 0.90535 0.92147 0.88871 0.92654 1.86716 1.37051 1.84698 1.25531 1.21500 0.96657 0.95666 0.95245 0.90920 1.22390 0.95089 0.79095 1.01182 1.86344 1.38113 1.18499 1.96680 0.91919 0.90330 0.89322 0.79211 0.92453 0.91150 0.78567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 13.96 55.43 0.77 -24.72 15 2 C 0.09 2.52 5.46 -17.82 -0.10 2.42 15 3 Si 0.86 21.71 25.23 -169.99 -4.29 17.42 15 4 H -0.26 -6.75 7.11 56.52 0.40 -6.34 15 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.25 -6.23 6.48 56.52 0.37 -5.86 15 7 C -0.49 -13.12 8.17 -34.44 -0.28 -13.40 15 8 H 0.10 2.82 4.87 -52.49 -0.26 2.57 15 9 C 0.10 2.31 2.67 -27.52 -0.07 2.23 15 10 H 0.06 1.41 7.08 -51.93 -0.37 1.05 15 11 S -0.39 -9.29 19.46 -107.50 -2.09 -11.38 15 12 C -0.11 -1.94 7.19 38.30 0.28 -1.66 15 13 C 0.12 2.20 3.41 -25.62 -0.09 2.11 15 14 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 15 O -0.54 -9.86 11.39 -35.23 -0.40 -10.26 15 16 C -0.07 -1.44 2.86 -90.28 -0.26 -1.70 15 17 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 18 C 0.10 2.01 4.38 37.16 0.16 2.18 15 19 O -0.59 -10.45 13.38 -35.23 -0.47 -10.92 15 20 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 22 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.36 4.89 9.09 45.56 0.41 5.30 15 24 H 0.06 1.21 6.81 -51.93 -0.35 0.85 15 25 H 0.07 1.60 6.18 -51.93 -0.32 1.27 15 26 H 0.37 4.88 9.12 45.56 0.42 5.29 15 LS Contribution 222.26 15.07 3.35 3.35 Total: -1.00 -31.59 222.26 -4.82 -36.41 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -1.33 Total: 7.92 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.36 Total: -7.81 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.77 Total: -24.72 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.87 Total: -21.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.29 Total: 17.42 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -2.09 Total: -11.38 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.59 -4.82 -36.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060166271.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.270 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds