Wall clock time and date at job start Thu Apr 9 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.30572 * 59.29762 * 9 7 2 11 11 S 1.83402 * 110.34287 * 297.12918 * 9 7 2 12 12 C 1.84210 * 95.77546 * 221.42611 * 11 9 7 13 13 C 1.55159 * 100.96117 * 35.25154 * 12 11 9 14 14 H 1.09001 * 109.60576 * 78.54966 * 13 12 11 15 15 O 1.42894 * 109.45437 * 198.77998 * 13 12 11 16 16 C 1.52945 * 108.95904 * 318.62376 * 13 12 11 17 17 H 1.09000 * 108.88420 * 269.30278 * 16 13 12 18 18 C 1.52999 * 108.88570 * 150.89401 * 16 13 12 19 19 O 1.42899 * 109.47250 * 62.01743 * 18 16 13 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.08991 * 111.05469 * 277.34523 * 12 11 9 22 22 H 1.08995 * 111.19607 * 153.21755 * 12 11 9 23 23 H 0.96702 * 114.00182 * 299.44372 * 15 13 12 24 24 H 1.09006 * 109.47007 * 182.01419 * 18 16 13 25 25 H 1.08996 * 109.47439 * 302.01351 * 18 16 13 26 26 H 0.96700 * 114.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6096 -2.5655 -0.8792 11 16 0.2538 -2.6595 1.5303 12 6 0.6320 -4.4402 1.8122 13 6 2.0994 -4.5127 1.3134 14 1 2.7659 -4.1149 2.0787 15 8 2.4422 -5.8725 1.0390 16 6 2.2316 -3.6823 0.0358 17 1 2.0414 -4.3248 -0.8238 18 6 3.6607 -3.1442 -0.0595 19 8 4.5767 -4.2377 -0.1441 20 1 -0.4850 0.8401 0.0004 21 1 -0.0183 -5.0782 1.2139 22 1 0.5634 -4.6950 2.8697 23 1 2.3801 -6.4565 1.8072 24 1 3.7558 -2.5211 -0.9488 25 1 3.8851 -2.5500 0.8262 26 1 5.5038 -3.9702 -0.2076 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060166272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:42 Heat of formation + Delta-G solvation = -100.977268 kcal Electronic energy + Delta-G solvation = -11895.463699 eV Core-core repulsion = 9679.336090 eV Total energy + Delta-G solvation = -2216.127609 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 204.061 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.94844 -35.77598 -34.00171 -32.15604 -28.95851 -26.20614 -24.02851 -22.38762 -19.13023 -17.21147 -16.92910 -16.05595 -15.35077 -14.64950 -14.30565 -13.86631 -13.06468 -12.78472 -12.49476 -12.21934 -11.71140 -11.41562 -11.08288 -10.79191 -10.55909 -10.20116 -9.97478 -9.61426 -9.24121 -9.11664 -8.69717 -8.47444 -6.29727 -6.24366 -4.32295 3.03575 3.24081 3.26025 3.26525 3.94396 4.22583 4.72542 5.02417 5.24476 5.31399 5.57065 5.83051 5.94373 6.10482 6.24220 6.42878 6.46565 6.63382 6.71220 7.25028 7.59369 7.88840 8.11750 8.24905 8.58973 9.26520 10.76653 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.038269 B = 0.014093 C = 0.010889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.484055 B = 1986.383368 C = 2570.670353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.083 0.917 9 C 0.129 3.871 10 H 0.058 0.942 11 S -0.318 6.318 12 C -0.136 4.136 13 C 0.122 3.878 14 H 0.060 0.940 15 O -0.557 6.557 16 C -0.080 4.080 17 H 0.072 0.928 18 C 0.092 3.908 19 O -0.579 6.579 20 H 0.268 0.732 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.365 0.635 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -5.128 1.740 7.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.005 3.995 10 H 0.076 0.924 11 S -0.089 6.089 12 C -0.284 4.284 13 C 0.062 3.938 14 H 0.078 0.922 15 O -0.361 6.361 16 C -0.100 4.100 17 H 0.091 0.909 18 C 0.015 3.985 19 O -0.383 6.383 20 H 0.078 0.922 21 H 0.095 0.905 22 H 0.101 0.899 23 H 0.210 0.790 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.850 -4.359 1.804 6.089 hybrid contribution 1.272 0.297 0.031 1.307 sum 5.123 -4.062 1.834 6.790 Atomic orbital electron populations 1.69932 1.06177 1.27549 1.44673 1.25168 0.94953 0.99927 0.93890 0.86433 0.79816 0.82489 0.78509 1.20176 1.19493 1.20878 1.21319 0.93767 0.88999 1.51052 0.89954 1.21139 0.92735 0.93704 0.91937 0.92377 1.88579 1.71850 1.05686 1.42745 1.24950 0.99388 1.01301 1.02809 1.22686 0.92371 0.82054 0.96715 0.92227 1.86600 1.91451 1.19451 1.38622 1.21476 0.95309 0.96286 0.96942 0.90911 1.22551 0.88306 0.86985 1.00661 1.86572 1.18743 1.35560 1.97391 0.92157 0.90467 0.89870 0.78962 0.92295 0.92924 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.71 12.43 55.43 0.69 -23.02 15 2 C 0.07 1.85 5.32 -17.82 -0.09 1.75 15 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 15 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.51 -13.02 7.62 -34.44 -0.26 -13.28 15 8 H 0.08 1.97 4.62 -52.49 -0.24 1.73 15 9 C 0.13 3.20 3.17 -27.52 -0.09 3.11 15 10 H 0.06 1.56 8.14 -51.93 -0.42 1.14 15 11 S -0.32 -7.85 21.61 -107.50 -2.32 -10.17 15 12 C -0.14 -2.65 7.18 38.30 0.27 -2.38 15 13 C 0.12 2.39 3.08 -25.62 -0.08 2.31 15 14 H 0.06 1.18 7.77 -51.93 -0.40 0.77 15 15 O -0.56 -10.02 12.95 -35.37 -0.46 -10.48 15 16 C -0.08 -1.73 2.65 -90.28 -0.24 -1.97 15 17 H 0.07 1.62 8.04 -51.93 -0.42 1.20 15 18 C 0.09 1.81 4.73 37.16 0.18 1.99 15 19 O -0.58 -10.37 13.05 -35.37 -0.46 -10.83 15 20 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 22 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 23 H 0.37 4.72 9.09 45.56 0.41 5.13 15 24 H 0.06 1.16 6.96 -51.93 -0.36 0.80 15 25 H 0.05 1.05 7.05 -51.93 -0.37 0.68 15 26 H 0.36 4.63 9.12 45.56 0.42 5.04 15 LS Contribution 230.02 15.07 3.47 3.47 Total: -1.00 -30.40 230.02 -5.78 -36.19 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -1.36 Total: 8.22 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.31 Total: -8.46 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.69 Total: -23.02 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.92 Total: -21.31 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -2.32 Total: -10.17 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.40 -5.78 -36.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060166272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.790 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds