Wall clock time and date at job start Thu Apr 9 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.30572 * 59.29762 * 9 7 2 11 11 S 1.83402 * 110.34287 * 297.12918 * 9 7 2 12 12 C 1.84210 * 95.77546 * 221.42611 * 11 9 7 13 13 C 1.55159 * 100.96117 * 35.25154 * 12 11 9 14 14 H 1.09001 * 109.60576 * 78.54966 * 13 12 11 15 15 O 1.42894 * 109.45437 * 198.77998 * 13 12 11 16 16 C 1.52945 * 108.95904 * 318.62376 * 13 12 11 17 17 H 1.09000 * 108.88420 * 269.30278 * 16 13 12 18 18 C 1.52999 * 108.88570 * 150.89401 * 16 13 12 19 19 O 1.42899 * 109.47250 * 62.01743 * 18 16 13 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.08991 * 111.05469 * 277.34523 * 12 11 9 22 22 H 1.08995 * 111.19607 * 153.21755 * 12 11 9 23 23 H 0.96702 * 114.00182 * 299.44372 * 15 13 12 24 24 H 1.09006 * 109.47007 * 182.01419 * 18 16 13 25 25 H 1.08996 * 109.47439 * 302.01351 * 18 16 13 26 26 H 0.96700 * 114.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6096 -2.5655 -0.8792 11 16 0.2538 -2.6595 1.5303 12 6 0.6320 -4.4402 1.8122 13 6 2.0994 -4.5127 1.3134 14 1 2.7659 -4.1149 2.0787 15 8 2.4422 -5.8725 1.0390 16 6 2.2316 -3.6823 0.0358 17 1 2.0414 -4.3248 -0.8238 18 6 3.6607 -3.1442 -0.0595 19 8 4.5767 -4.2377 -0.1441 20 1 -0.4850 0.8401 0.0004 21 1 -0.0183 -5.0782 1.2139 22 1 0.5634 -4.6950 2.8697 23 1 2.3801 -6.4565 1.8072 24 1 3.7558 -2.5211 -0.9488 25 1 3.8851 -2.5500 0.8262 26 1 5.5038 -3.9702 -0.2076 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060166272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:42 Heat of formation + Delta-G solvation = -125.777050 kcal Electronic energy + Delta-G solvation = -11896.539098 eV Core-core repulsion = 9679.336090 eV Total energy + Delta-G solvation = -2217.203008 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 204.061 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.51973 -37.22483 -35.75418 -33.94433 -30.63002 -28.00612 -25.80853 -24.05002 -20.85667 -18.87872 -18.48626 -17.69914 -17.11750 -16.47855 -15.88023 -15.51935 -14.80324 -14.32775 -14.23803 -13.80047 -13.48757 -13.15854 -12.84222 -12.51604 -12.25530 -11.83321 -11.73417 -11.23877 -10.87747 -10.75373 -10.57916 -10.33626 -8.26901 -8.21298 -6.35563 1.27458 1.44128 1.51249 1.54513 2.09882 2.37199 3.23381 3.24559 3.66065 3.70628 3.98850 4.27987 4.34123 4.52489 4.64506 4.83417 4.85355 4.97569 5.06111 5.33806 5.61403 5.94664 6.61721 6.93887 7.05290 7.27903 8.80131 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.038269 B = 0.014093 C = 0.010889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.484055 B = 1986.383368 C = 2570.670353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.019 3.981 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.253 1.253 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.098 0.902 9 C 0.133 3.867 10 H 0.021 0.979 11 S -0.383 6.383 12 C -0.111 4.111 13 C 0.134 3.866 14 H 0.064 0.936 15 O -0.563 6.563 16 C -0.083 4.083 17 H 0.060 0.940 18 C 0.105 3.895 19 O -0.585 6.585 20 H 0.266 0.734 21 H 0.082 0.918 22 H 0.114 0.886 23 H 0.390 0.610 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 -5.815 2.391 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.187 4.187 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.177 1.177 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.116 0.884 9 C 0.008 3.992 10 H 0.039 0.961 11 S -0.154 6.154 12 C -0.260 4.260 13 C 0.073 3.927 14 H 0.082 0.918 15 O -0.370 6.370 16 C -0.104 4.104 17 H 0.079 0.921 18 C 0.027 3.973 19 O -0.392 6.392 20 H 0.075 0.925 21 H 0.101 0.899 22 H 0.133 0.867 23 H 0.239 0.761 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.561 -5.071 2.458 7.917 hybrid contribution 0.750 0.347 -0.167 0.843 sum 6.311 -4.724 2.292 8.209 Atomic orbital electron populations 1.70094 1.07868 1.28067 1.46438 1.26030 0.95620 1.03472 0.93556 0.85410 0.79060 0.78115 0.78357 1.20225 1.17688 1.21106 1.21710 0.94627 0.89367 1.50378 0.88405 1.20948 0.92693 0.95288 0.90271 0.96097 1.88629 1.72681 1.11239 1.42855 1.25001 0.99443 0.96638 1.04889 1.22387 0.92165 0.82781 0.95342 0.91806 1.86554 1.91214 1.18792 1.40488 1.21412 0.95889 0.95250 0.97810 0.92107 1.22232 0.87594 0.87107 1.00342 1.86503 1.20449 1.34944 1.97316 0.92508 0.89927 0.86748 0.76060 0.92748 0.93039 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.85 12.43 21.45 0.27 -50.59 15 2 C 0.02 0.99 5.32 84.66 0.45 1.44 15 3 Si 0.97 41.12 29.54 68.60 2.03 43.15 15 4 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.25 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.29 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.52 -26.56 7.62 25.60 0.20 -26.37 15 8 H 0.10 4.58 4.62 -2.91 -0.01 4.57 15 9 C 0.13 6.66 3.17 30.08 0.10 6.75 15 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 11 S -0.38 -18.96 21.61 -56.49 -1.22 -20.18 15 12 C -0.11 -4.10 7.18 72.72 0.52 -3.57 15 13 C 0.13 4.91 3.08 31.32 0.10 5.01 15 14 H 0.06 2.33 7.77 -2.39 -0.02 2.31 15 15 O -0.56 -18.35 12.95 -148.85 -1.93 -20.27 15 16 C -0.08 -3.52 2.65 -10.57 -0.03 -3.55 15 17 H 0.06 2.68 8.04 -2.39 -0.02 2.66 15 18 C 0.10 3.93 4.73 71.98 0.34 4.27 15 19 O -0.58 -19.26 13.05 -148.85 -1.94 -21.21 15 20 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 21 H 0.08 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.11 3.52 8.14 -2.39 -0.02 3.50 15 23 H 0.39 8.44 9.09 -74.06 -0.67 7.76 15 24 H 0.05 2.07 6.96 -2.38 -0.02 2.05 15 25 H 0.05 1.94 7.05 -2.39 -0.02 1.93 15 26 H 0.39 8.57 9.12 -74.06 -0.68 7.90 15 Total: -1.00 -65.00 230.02 -1.27 -66.27 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.14 Total: 18.85 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 1.67 Total: -16.02 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.27 Total: -50.59 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -3.87 Total: -41.48 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: -18.96 SS G_CDS: -1.22 Total: -20.18 kcal Total: -65.00 -1.27 -66.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060166272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.512 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds