Wall clock time and date at job start Thu Apr 9 2020 14:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99971 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00175 * 3 2 1 5 5 H 1.48495 * 109.47224 * 29.99793 * 3 2 1 6 6 H 1.48497 * 109.47310 * 150.00370 * 3 2 1 7 7 C 1.37880 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00038 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99899 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.46619 * 60.95851 * 9 7 2 11 11 N 1.48566 * 110.41299 * 298.54170 * 9 7 2 12 12 C 1.48556 * 104.22488 * 201.74251 * 11 9 7 13 13 H 1.09001 * 110.40893 * 280.58827 * 12 11 9 14 14 C 1.52995 * 110.41332 * 158.26352 * 12 11 9 15 15 O 1.42903 * 109.47350 * 66.45042 * 14 12 11 16 16 C 1.54385 * 104.59520 * 39.48059 * 12 11 9 17 17 H 1.09004 * 110.32462 * 217.14966 * 16 12 11 18 18 O 1.42897 * 110.31836 * 95.04635 * 16 12 11 19 19 C 1.54264 * 105.05937 * 336.15067 * 16 12 11 20 20 H 1.09005 * 110.31971 * 241.10013 * 19 16 12 21 21 O 1.42900 * 110.32284 * 118.89522 * 19 16 12 22 22 H 0.96999 * 119.99921 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99785 * 321.30037 * 11 9 7 24 24 H 1.09004 * 109.47106 * 186.45526 * 14 12 11 25 25 H 1.08998 * 109.47191 * 306.45205 * 14 12 11 26 26 H 0.96693 * 113.99875 * 179.97438 * 15 14 12 27 27 H 0.96708 * 113.99867 * 180.02562 * 18 16 12 28 28 H 0.96702 * 114.00191 * 64.36215 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8923 -0.6988 0.8933 11 7 4.0301 -0.5279 -1.2225 12 6 5.4111 -1.0558 -1.3679 13 1 6.0895 -0.5375 -0.6901 14 6 5.8887 -0.9097 -2.8140 15 8 6.0210 0.4767 -3.1342 16 6 5.2997 -2.5474 -0.9857 17 1 6.1867 -2.8651 -0.4376 18 8 5.1275 -3.3481 -2.1566 19 6 4.0500 -2.6383 -0.0858 20 1 4.3228 -3.0002 0.9055 21 8 3.0736 -3.4976 -0.6777 22 1 -0.4850 0.8400 0.0004 23 1 3.4676 -0.7603 -2.0272 24 1 6.8539 -1.4030 -2.9295 25 1 5.1630 -1.3698 -3.4846 26 1 6.3214 0.6447 -4.0379 27 1 5.0511 -4.2954 -1.9776 28 1 3.3570 -4.4188 -0.7575 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306379176.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:35 Heat of formation + Delta-G solvation = -134.721522 kcal Electronic energy + Delta-G solvation = -14155.620500 eV Core-core repulsion = 11592.995422 eV Total energy + Delta-G solvation = -2562.625078 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.29556 -36.40412 -35.18915 -34.52620 -32.24464 -29.40320 -27.71384 -25.66902 -22.87301 -20.32466 -19.53819 -18.20795 -16.96828 -16.47753 -15.71610 -15.38418 -14.44388 -14.36760 -14.14387 -13.50867 -13.07179 -12.30354 -12.10846 -11.97297 -11.57948 -11.31459 -10.74751 -10.49321 -10.40647 -9.75475 -9.66176 -9.50045 -9.15688 -8.99455 -8.46073 -7.63207 -5.92831 -3.99751 3.60365 3.67916 3.82688 4.29370 4.40889 4.68643 4.93193 4.98724 5.19737 5.37133 5.55193 5.60314 5.70290 5.77726 5.98844 6.02650 6.29119 6.47457 6.97938 7.55850 7.67934 7.87807 7.97103 8.28347 8.30175 8.74909 9.20596 9.69216 11.17075 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.016239 C = 0.011793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.951473 B = 1723.801240 C = 2373.758806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.088 0.912 9 C 0.171 3.829 10 H 0.059 0.941 11 N -0.653 5.653 12 C 0.075 3.925 13 H 0.092 0.908 14 C 0.093 3.907 15 O -0.565 6.565 16 C 0.040 3.960 17 H 0.055 0.945 18 O -0.549 6.549 19 C 0.054 3.946 20 H 0.051 0.949 21 O -0.517 6.517 22 H 0.262 0.738 23 H 0.344 0.656 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.370 0.630 27 H 0.368 0.632 28 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -5.534 -3.517 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.128 4.128 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.241 1.241 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.106 0.894 9 C 0.064 3.936 10 H 0.077 0.923 11 N -0.284 5.284 12 C -0.036 4.036 13 H 0.110 0.890 14 C 0.015 3.985 15 O -0.369 6.369 16 C -0.022 4.022 17 H 0.073 0.927 18 O -0.354 6.354 19 C -0.008 4.008 20 H 0.069 0.931 21 O -0.318 6.318 22 H 0.072 0.928 23 H 0.162 0.838 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.215 0.785 27 H 0.214 0.786 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.277 -3.524 -2.921 13.102 hybrid contribution 0.867 -1.325 -0.522 1.667 sum 13.143 -4.850 -3.443 14.427 Atomic orbital electron populations 1.69948 1.06665 1.27089 1.50075 1.25082 0.94732 0.99710 0.93277 0.86188 0.78853 0.81598 0.78772 1.20199 1.24141 1.19315 1.20838 0.87460 0.95055 1.51437 0.89433 1.20746 0.97475 0.84810 0.90617 0.92315 1.63771 1.00234 1.56388 1.08002 1.22622 0.95562 0.89731 0.95660 0.88967 1.21986 0.98746 0.81662 0.96112 1.86601 1.90789 1.24961 1.34518 1.24109 0.97323 0.93486 0.87279 0.92666 1.86545 1.96132 1.21054 1.31676 1.23832 0.87600 0.96234 0.93119 0.93129 1.87009 1.40799 1.19999 1.84024 0.92825 0.83813 0.94209 0.92771 0.78520 0.78558 0.81146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.52 13.96 55.43 0.77 -27.75 15 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 15 3 Si 0.92 24.40 26.17 -169.99 -4.45 19.95 15 4 H -0.28 -7.49 7.11 56.52 0.40 -7.09 15 5 H -0.31 -8.32 7.11 56.52 0.40 -7.92 15 6 H -0.27 -6.99 6.57 56.52 0.37 -6.62 15 7 C -0.51 -14.73 8.76 -34.44 -0.30 -15.03 15 8 H 0.09 2.79 6.88 -52.49 -0.36 2.43 15 9 C 0.17 4.09 2.45 -67.22 -0.16 3.93 15 10 H 0.06 1.44 7.31 -51.93 -0.38 1.06 15 11 N -0.65 -14.98 4.94 -97.09 -0.48 -15.46 15 12 C 0.08 1.39 3.49 -66.07 -0.23 1.16 15 13 H 0.09 1.68 8.14 -51.93 -0.42 1.25 15 14 C 0.09 1.51 5.83 37.15 0.22 1.73 15 15 O -0.56 -9.42 13.64 -35.23 -0.48 -9.90 15 16 C 0.04 0.63 4.27 -25.34 -0.11 0.52 15 17 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 18 O -0.55 -8.04 11.07 -56.60 -0.63 -8.67 15 19 C 0.05 1.03 4.27 -25.35 -0.11 0.92 15 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 21 O -0.52 -10.20 10.79 -56.60 -0.61 -10.81 15 22 H 0.26 7.84 8.31 -40.82 -0.34 7.50 15 23 H 0.34 8.43 8.29 -39.29 -0.33 8.10 15 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 15 25 H 0.05 0.93 7.48 -51.93 -0.39 0.54 15 26 H 0.37 4.13 9.12 45.56 0.42 4.55 15 27 H 0.37 3.71 8.18 45.56 0.37 4.09 15 28 H 0.34 4.68 8.18 45.56 0.37 5.05 15 LS Contribution 232.22 15.07 3.50 3.50 Total: -1.00 -35.57 232.22 -4.32 -39.89 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -1.15 Total: 13.85 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.79 Total: -4.61 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.29 Total: -43.21 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.72 Total: -29.38 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.45 Total: 19.95 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -35.57 -4.32 -39.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306379176.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.830 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds