Wall clock time and date at job start Thu Apr 9 2020 14:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99971 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00175 * 3 2 1 5 5 H 1.48495 * 109.47224 * 29.99793 * 3 2 1 6 6 H 1.48497 * 109.47310 * 150.00370 * 3 2 1 7 7 C 1.37880 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00038 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99899 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.46619 * 60.95851 * 9 7 2 11 11 N 1.48566 * 110.41299 * 298.54170 * 9 7 2 12 12 C 1.48556 * 104.22488 * 201.74251 * 11 9 7 13 13 H 1.09001 * 110.40893 * 280.58827 * 12 11 9 14 14 C 1.52995 * 110.41332 * 158.26352 * 12 11 9 15 15 O 1.42903 * 109.47350 * 66.45042 * 14 12 11 16 16 C 1.54385 * 104.59520 * 39.48059 * 12 11 9 17 17 H 1.09004 * 110.32462 * 217.14966 * 16 12 11 18 18 O 1.42897 * 110.31836 * 95.04635 * 16 12 11 19 19 C 1.54264 * 105.05937 * 336.15067 * 16 12 11 20 20 H 1.09005 * 110.31971 * 241.10013 * 19 16 12 21 21 O 1.42900 * 110.32284 * 118.89522 * 19 16 12 22 22 H 0.96999 * 119.99921 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99785 * 321.30037 * 11 9 7 24 24 H 1.09004 * 109.47106 * 186.45526 * 14 12 11 25 25 H 1.08998 * 109.47191 * 306.45205 * 14 12 11 26 26 H 0.96693 * 113.99875 * 179.97438 * 15 14 12 27 27 H 0.96708 * 113.99867 * 180.02562 * 18 16 12 28 28 H 0.96702 * 114.00191 * 64.36215 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8923 -0.6988 0.8933 11 7 4.0301 -0.5279 -1.2225 12 6 5.4111 -1.0558 -1.3679 13 1 6.0895 -0.5375 -0.6901 14 6 5.8887 -0.9097 -2.8140 15 8 6.0210 0.4767 -3.1342 16 6 5.2997 -2.5474 -0.9857 17 1 6.1867 -2.8651 -0.4376 18 8 5.1275 -3.3481 -2.1566 19 6 4.0500 -2.6383 -0.0858 20 1 4.3228 -3.0002 0.9055 21 8 3.0736 -3.4976 -0.6777 22 1 -0.4850 0.8400 0.0004 23 1 3.4676 -0.7603 -2.0272 24 1 6.8539 -1.4030 -2.9295 25 1 5.1630 -1.3698 -3.4846 26 1 6.3214 0.6447 -4.0379 27 1 5.0511 -4.2954 -1.9776 28 1 3.3570 -4.4188 -0.7575 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306379176.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:34 Heat of formation + Delta-G solvation = -170.072424 kcal Electronic energy + Delta-G solvation = -14157.153430 eV Core-core repulsion = 11592.995422 eV Total energy + Delta-G solvation = -2564.158009 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72902 -37.67481 -36.52748 -36.05103 -34.38591 -31.07059 -29.18269 -27.48494 -24.48466 -21.90362 -21.06815 -19.73724 -18.50035 -18.04270 -17.17357 -16.91739 -16.20861 -15.83478 -15.57932 -15.12145 -14.73023 -14.09122 -13.73872 -13.60842 -13.18793 -12.72583 -12.58284 -12.35555 -11.80060 -11.73773 -11.34528 -11.01333 -10.87658 -10.73726 -10.40608 -9.33214 -8.23660 -6.32047 1.44855 1.54036 1.68256 2.48103 2.98531 3.17200 3.24867 3.62478 3.69344 3.82702 4.14786 4.31816 4.38094 4.49881 4.58958 4.68933 4.83579 5.10730 5.20390 5.53911 6.12855 6.18439 6.66579 6.75977 6.84508 6.98901 7.20031 7.41055 8.90423 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.016239 C = 0.011793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.951473 B = 1723.801240 C = 2373.758806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.020 3.980 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.314 1.314 6 H -0.257 1.257 7 C -0.503 4.503 8 H 0.047 0.953 9 C 0.161 3.839 10 H 0.055 0.945 11 N -0.668 5.668 12 C 0.063 3.937 13 H 0.098 0.902 14 C 0.101 3.899 15 O -0.589 6.589 16 C 0.061 3.939 17 H 0.098 0.902 18 O -0.558 6.558 19 C 0.054 3.946 20 H 0.071 0.929 21 O -0.549 6.549 22 H 0.263 0.737 23 H 0.330 0.670 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.392 0.608 27 H 0.390 0.610 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.574 -6.103 -3.806 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.178 4.178 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.243 1.243 6 H -0.181 1.181 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.053 3.947 10 H 0.072 0.928 11 N -0.298 5.298 12 C -0.047 4.047 13 H 0.116 0.884 14 C 0.023 3.977 15 O -0.396 6.396 16 C 0.000 4.000 17 H 0.115 0.885 18 O -0.366 6.366 19 C -0.007 4.007 20 H 0.089 0.911 21 O -0.355 6.355 22 H 0.072 0.928 23 H 0.146 0.854 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.241 0.759 27 H 0.240 0.760 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 15.093 -4.138 -3.217 15.977 hybrid contribution 0.016 -1.269 -0.476 1.356 sum 15.109 -5.407 -3.692 16.467 Atomic orbital electron populations 1.70075 1.08307 1.27824 1.52796 1.25856 0.95272 1.03054 0.93589 0.85135 0.77872 0.77734 0.78143 1.20974 1.24304 1.18137 1.21057 0.90478 0.93167 1.49495 0.93455 1.20631 0.94194 0.88817 0.91048 0.92777 1.63557 1.02369 1.57179 1.06686 1.22841 0.92799 0.91528 0.97531 0.88409 1.21896 0.99809 0.81706 0.94290 1.86537 1.91098 1.25299 1.36695 1.23797 0.96887 0.92290 0.87072 0.88473 1.86505 1.96072 1.22852 1.31142 1.23745 0.88403 0.93336 0.95239 0.91106 1.86922 1.42120 1.22217 1.84197 0.92831 0.85399 0.91077 0.94003 0.75925 0.75991 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.03 13.96 21.45 0.30 -61.73 15 2 C 0.02 1.25 5.47 84.66 0.46 1.71 15 3 Si 0.98 51.38 26.17 68.60 1.80 53.17 15 4 H -0.28 -15.03 7.11 99.48 0.71 -14.32 15 5 H -0.31 -16.28 7.11 99.48 0.71 -15.57 15 6 H -0.26 -12.80 6.57 99.48 0.65 -12.15 15 7 C -0.50 -29.63 8.76 25.60 0.22 -29.41 15 8 H 0.05 3.12 6.88 -2.91 -0.02 3.10 15 9 C 0.16 7.57 2.45 44.31 0.11 7.67 15 10 H 0.05 2.58 7.31 -2.39 -0.02 2.56 15 11 N -0.67 -29.73 4.94 -461.10 -2.28 -32.01 15 12 C 0.06 2.13 3.49 45.06 0.16 2.29 15 13 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 14 C 0.10 2.95 5.83 71.98 0.42 3.37 15 15 O -0.59 -18.05 13.64 -148.98 -2.03 -20.08 15 16 C 0.06 1.69 4.27 31.49 0.13 1.83 15 17 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 18 O -0.56 -14.07 11.07 -128.55 -1.42 -15.49 15 19 C 0.05 1.94 4.27 31.49 0.13 2.07 15 20 H 0.07 2.24 8.14 -2.38 -0.02 2.22 15 21 O -0.55 -20.87 10.79 -128.55 -1.39 -22.26 15 22 H 0.26 16.20 8.31 -92.71 -0.77 15.43 15 23 H 0.33 16.06 8.29 -89.69 -0.74 15.31 15 24 H 0.07 1.66 8.14 -2.38 -0.02 1.64 15 25 H 0.04 1.33 7.48 -2.39 -0.02 1.31 15 26 H 0.39 7.69 9.12 -74.06 -0.68 7.01 15 27 H 0.39 6.12 8.18 -74.05 -0.61 5.52 15 28 H 0.37 9.16 8.18 -74.06 -0.61 8.55 15 Total: -1.00 -78.24 232.22 -4.85 -83.09 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -1.47 Total: 25.77 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 1.64 Total: -10.46 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -1.98 Total: -93.74 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -4.84 Total: -57.83 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 1.80 Total: 53.17 kcal Total: -78.24 -4.85 -83.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306379176.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.984 kcal (2) G-P(sol) polarization free energy of solvation -78.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds