Wall clock time and date at job start Thu Apr 9 2020 14:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48498 * 109.46856 * 269.99215 * 3 2 1 5 5 H 1.48491 * 109.47213 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.46874 * 149.99707 * 3 2 1 7 7 C 1.37879 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99846 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99722 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.48831 * 110.97006 * 74.57971 * 10 9 7 12 12 C 1.54377 * 104.46385 * 159.05305 * 11 10 9 13 13 H 1.08998 * 110.32367 * 217.17661 * 12 11 10 14 14 F 1.39905 * 110.32279 * 95.07369 * 12 11 10 15 15 C 1.54257 * 105.15242 * 336.12313 * 12 11 10 16 16 C 1.48552 * 111.00372 * 190.00150 * 10 9 7 17 17 H 1.09002 * 110.51269 * 319.79360 * 16 10 9 18 18 C 1.53005 * 110.41052 * 82.18149 * 16 10 9 19 19 O 1.42903 * 109.47056 * 61.63119 * 18 16 10 20 20 H 0.96999 * 119.99781 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.47339 * 60.00717 * 9 7 2 22 22 H 1.08996 * 109.47429 * 300.00411 * 9 7 2 23 23 H 1.08997 * 110.44560 * 40.32677 * 11 10 9 24 24 H 1.08994 * 110.49606 * 277.80286 * 11 10 9 25 25 H 1.09001 * 110.32279 * 118.94613 * 15 12 11 26 26 H 1.08996 * 110.33080 * 241.15212 * 15 12 11 27 27 H 1.08997 * 109.47051 * 181.62744 * 18 16 10 28 28 H 1.08997 * 109.47084 * 301.62493 * 18 16 10 29 29 H 0.96703 * 113.99636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 3.8310 -3.2040 -1.3389 12 6 4.8323 -4.3790 -1.3463 13 1 5.2811 -4.4877 -2.3337 14 9 4.1923 -5.5652 -0.9713 15 6 5.9077 -3.9989 -0.3078 16 6 5.4663 -2.6257 0.2424 17 1 5.9680 -1.8214 -0.2958 18 6 5.7636 -2.5304 1.7403 19 8 5.1770 -3.6457 2.4142 20 1 -0.4850 0.8401 -0.0004 21 1 3.8746 -0.6800 0.8912 22 1 3.8752 -0.6803 -0.8888 23 1 4.0761 -2.4907 -2.1258 24 1 2.8124 -3.5718 -1.4618 25 1 5.9369 -4.7365 0.4942 26 1 6.8841 -3.9192 -0.7856 27 1 6.8421 -2.5370 1.8978 28 1 5.3443 -1.6053 2.1357 29 1 5.3256 -3.6503 3.3697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306501491.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:44 Heat of formation + Delta-G solvation = -92.514461 kcal Electronic energy + Delta-G solvation = -13728.192989 eV Core-core repulsion = 11179.770936 eV Total energy + Delta-G solvation = -2548.422053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.106 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.10962 -38.45637 -35.76173 -32.94432 -30.99130 -29.55703 -26.87503 -24.68129 -22.02651 -20.35220 -19.69911 -17.17481 -16.74985 -16.12760 -15.51343 -14.62959 -14.48638 -14.17451 -13.69710 -13.47716 -12.84750 -12.52639 -12.40010 -12.02931 -11.51490 -11.13814 -10.92549 -10.65629 -10.51058 -10.24036 -10.10855 -9.81842 -9.55200 -9.29626 -8.58392 -7.56375 -6.04820 -4.02127 3.25114 3.32936 3.33620 4.39973 4.53303 4.56697 4.79736 5.01097 5.03633 5.25456 5.28115 5.52528 5.62339 5.66087 5.86615 5.94579 6.09355 6.23196 6.47077 6.51867 6.72291 6.85449 7.50044 7.81154 7.83024 8.04671 8.64888 9.06811 9.56095 11.08605 Molecular weight = 203.11amu Principal moments of inertia in cm(-1) A = 0.037291 B = 0.010997 C = 0.009757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.664877 B = 2545.589110 C = 2868.955065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.151 3.849 10 N -0.477 5.477 11 C 0.020 3.980 12 C 0.086 3.914 13 H 0.081 0.919 14 F -0.208 7.208 15 C -0.141 4.141 16 C 0.052 3.948 17 H 0.057 0.943 18 C 0.095 3.905 19 O -0.550 6.550 20 H 0.263 0.737 21 H 0.029 0.971 22 H -0.014 1.014 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.647 -4.306 -0.071 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.544 4.544 8 H 0.099 0.901 9 C 0.024 3.976 10 N -0.201 5.201 11 C -0.108 4.108 12 C 0.049 3.951 13 H 0.099 0.901 14 F -0.189 7.189 15 C -0.179 4.179 16 C -0.057 4.057 17 H 0.075 0.925 18 C 0.017 3.983 19 O -0.354 6.354 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.004 0.996 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 12.967 -4.622 -0.256 13.769 hybrid contribution 0.953 1.696 -0.077 1.947 sum 13.921 -2.926 -0.333 14.229 Atomic orbital electron populations 1.69898 1.06086 1.26766 1.51089 1.24915 0.94749 0.98746 0.94986 0.86871 0.80272 0.84199 0.78425 1.20337 1.21070 1.19369 1.20991 0.88512 0.94846 1.50028 0.90076 1.20404 0.97683 0.84415 0.95089 1.65484 1.09163 1.20234 1.25218 1.23638 1.00522 0.94649 0.92026 1.22318 0.93111 0.82024 0.97655 0.90083 1.92811 1.83801 1.49034 1.93232 1.22893 0.97205 0.98634 0.99197 1.22722 0.92273 0.96112 0.94603 0.92512 1.21961 0.94616 0.89426 0.92329 1.86642 1.79329 1.46207 1.23191 0.92659 0.95337 0.99604 0.93020 0.88581 0.88637 0.91088 0.94311 0.93383 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.14 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 15 7 C -0.51 -14.71 9.53 -34.44 -0.33 -15.04 15 8 H 0.08 2.62 8.06 -52.49 -0.42 2.19 15 9 C 0.15 3.70 3.61 -4.98 -0.02 3.68 15 10 N -0.48 -10.40 4.94 -223.34 -1.10 -11.50 15 11 C 0.02 0.40 5.93 -2.03 -0.01 0.38 15 12 C 0.09 1.40 4.84 -25.35 -0.12 1.27 15 13 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 14 F -0.21 -3.91 17.10 2.25 0.04 -3.87 15 15 C -0.14 -2.12 6.30 -25.35 -0.16 -2.28 15 16 C 0.05 0.90 2.68 -66.07 -0.18 0.72 15 17 H 0.06 0.91 8.00 -51.93 -0.42 0.49 15 18 C 0.10 1.48 6.86 37.16 0.25 1.73 15 19 O -0.55 -9.01 12.44 -35.23 -0.44 -9.45 15 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 21 H 0.03 0.70 6.20 -51.93 -0.32 0.38 15 22 H -0.01 -0.33 7.20 -51.93 -0.37 -0.70 15 23 H 0.05 0.95 7.76 -51.93 -0.40 0.55 15 24 H 0.10 2.07 8.12 -51.93 -0.42 1.65 15 25 H 0.10 1.54 6.90 -51.93 -0.36 1.18 15 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 15 28 H 0.05 0.79 7.24 -51.93 -0.38 0.42 15 29 H 0.37 4.12 9.12 45.56 0.42 4.53 15 LS Contribution 243.18 15.07 3.66 3.66 Total: -1.00 -33.30 243.18 -5.51 -38.80 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.11 Total: 0.35 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.66 Total: -7.66 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.33 Total: -38.65 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.44 Total: -9.45 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.30 -5.51 -38.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501491.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.713 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds