Wall clock time and date at job start Thu Apr 9 2020 14:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.88675 * 2 1 4 4 C 1.54496 * 110.91135 * 236.45322 * 2 1 3 5 5 C 1.51472 * 105.25998 * 215.54720 * 4 2 1 6 6 N 1.32298 * 130.14149 * 197.12698 * 5 4 2 7 7 C 1.31683 * 122.03101 * 180.02562 * 6 5 4 8 8 C 1.38226 * 120.80381 * 359.97220 * 7 6 5 9 9 C 1.38573 * 118.99146 * 0.03807 * 8 7 6 10 10 C 1.38176 * 109.59288 * 17.14737 * 5 4 2 11 11 C 1.51228 * 109.95148 * 359.94955 * 10 5 4 12 12 H 1.09000 * 110.31343 * 223.96648 * 11 10 5 13 13 C 1.50696 * 110.31501 * 101.88706 * 11 10 5 14 14 H 1.08002 * 119.99628 * 300.69773 * 13 11 10 15 15 C 1.37877 * 120.00155 * 120.69016 * 13 11 10 16 16 N 1.31516 * 119.99774 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00007 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47197 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47138 * 120.00509 * 17 15 13 20 20 H 1.48502 * 109.47394 * 240.00293 * 17 15 13 21 21 H 1.08999 * 109.46963 * 290.84210 * 1 2 3 22 22 H 1.09002 * 109.47066 * 50.84603 * 1 2 3 23 23 H 1.09002 * 109.47176 * 170.84661 * 1 2 3 24 24 H 1.08999 * 110.32871 * 96.56439 * 4 2 1 25 25 H 1.09004 * 110.20894 * 334.46614 * 4 2 1 26 26 H 1.08001 * 119.59867 * 179.97438 * 7 6 5 27 27 H 1.07999 * 120.50586 * 180.02562 * 8 7 6 28 28 H 1.07996 * 120.72262 * 180.02562 * 9 8 7 29 29 H 0.96999 * 119.99277 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0814 -0.7975 -1.2028 5 6 3.3344 -1.4769 -0.6900 6 7 4.3411 -2.0222 -1.3529 7 6 5.3639 -2.5774 -0.7368 8 6 5.4252 -2.6113 0.6437 9 6 4.3906 -2.0512 1.3759 10 6 3.3297 -1.4756 0.6917 11 6 2.0788 -0.7968 1.2029 12 1 2.3227 -0.1224 2.0238 13 6 1.0725 -1.8244 1.6527 14 1 0.7025 -2.5599 0.9536 15 6 0.6242 -1.8258 2.9566 16 7 1.0746 -0.9300 3.8076 17 14 -0.6226 -3.1001 3.5142 18 1 -0.9665 -3.9880 2.3746 19 1 -0.0433 -3.9107 4.6153 20 1 -1.8488 -2.4151 3.9962 21 1 -0.3633 0.3656 0.9604 22 1 -0.3633 0.6489 -0.7969 23 1 -0.3634 -1.0146 -0.1635 24 1 2.3257 -0.1237 -2.0240 25 1 1.3536 -1.5415 -1.5269 26 1 6.1646 -3.0116 -1.3171 27 1 6.2666 -3.0675 1.1441 28 1 4.4101 -2.0618 2.4557 29 1 0.7589 -0.9308 4.7248 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928797.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:40 Heat of formation + Delta-G solvation = 4.546418 kcal Electronic energy + Delta-G solvation = -12910.974000 eV Core-core repulsion = 10797.530047 eV Total energy + Delta-G solvation = -2113.443953 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43118 -37.86831 -34.50664 -33.24401 -31.60450 -29.28218 -27.32157 -25.94641 -23.19126 -22.43399 -20.78011 -18.44944 -17.32270 -16.95643 -16.43607 -15.78290 -15.71197 -14.63055 -14.34242 -14.07319 -13.65000 -13.43106 -13.12000 -13.03117 -12.80180 -12.50023 -12.21604 -11.98454 -11.67763 -11.19251 -10.94758 -10.62202 -10.44040 -10.05417 -9.39486 -8.13705 -6.21085 0.37775 0.56491 1.37753 1.41370 1.51344 2.40726 3.01964 3.17921 3.27376 3.92943 4.13292 4.27178 4.34103 4.40723 4.49829 4.61106 4.88356 4.99597 5.04728 5.10040 5.20808 5.32773 5.40653 5.53839 5.60001 5.69990 5.74785 5.86323 6.02802 6.32375 6.90209 7.20449 7.41854 8.93605 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.033871 B = 0.012884 C = 0.010660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.474344 B = 2172.689532 C = 2626.129431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.048 4.048 5 C 0.080 3.920 6 N -0.504 5.504 7 C 0.072 3.928 8 C -0.168 4.168 9 C -0.093 4.093 10 C -0.125 4.125 11 C 0.060 3.940 12 H 0.042 0.958 13 C -0.491 4.491 14 H 0.047 0.953 15 C 0.020 3.980 16 N -0.924 5.924 17 Si 0.946 3.054 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.277 1.277 21 H 0.035 0.965 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.188 0.812 27 H 0.164 0.836 28 H 0.116 0.884 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -1.203 -5.996 7.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.085 4.085 5 C -0.056 4.056 6 N -0.213 5.213 7 C -0.086 4.086 8 C -0.187 4.187 9 C -0.119 4.119 10 C -0.127 4.127 11 C 0.041 3.959 12 H 0.060 0.940 13 C -0.528 4.528 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.563 5.563 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.202 1.202 21 H 0.054 0.946 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.204 0.796 27 H 0.182 0.818 28 H 0.135 0.865 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.991 -1.141 -6.720 7.899 hybrid contribution -0.528 -0.668 1.816 2.006 sum 3.463 -1.809 -4.904 6.270 Atomic orbital electron populations 1.21373 0.93641 1.01010 0.99954 1.21960 0.96950 0.97294 0.94550 0.91818 1.20976 0.91238 0.98148 0.98169 1.22171 0.95126 0.96911 0.91415 1.66813 1.01819 1.10072 1.42636 1.23050 0.95990 0.97012 0.92525 1.22307 0.99741 1.00998 0.95701 1.21278 0.93518 0.96624 1.00475 1.22364 0.96458 0.97712 0.96190 1.18553 0.88815 0.94280 0.94291 0.93957 1.20952 1.22491 1.14274 0.95130 0.93475 1.25621 0.98113 0.97181 0.96917 1.70013 1.45202 1.36161 1.04963 0.85676 0.79332 0.79501 0.78251 1.19307 1.20922 1.20244 0.94624 0.92147 0.93239 0.89476 0.90144 0.79563 0.81831 0.86549 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 8.22 71.98 0.59 -3.39 15 2 C -0.09 -3.64 3.58 -9.82 -0.04 -3.68 15 3 H 0.06 2.48 8.14 -2.39 -0.02 2.47 15 4 C -0.05 -1.80 6.32 30.60 0.19 -1.61 15 5 C 0.08 3.38 7.32 42.72 0.31 3.70 15 6 N -0.50 -19.64 10.35 -182.98 -1.89 -21.54 15 7 C 0.07 2.32 11.18 84.71 0.95 3.27 15 8 C -0.17 -5.48 10.12 22.35 0.23 -5.26 15 9 C -0.09 -3.86 10.17 22.47 0.23 -3.63 15 10 C -0.12 -5.73 5.45 -19.59 -0.11 -5.84 15 11 C 0.06 2.96 3.06 -11.65 -0.04 2.93 15 12 H 0.04 2.37 6.97 -2.39 -0.02 2.35 15 13 C -0.49 -25.95 6.40 25.60 0.16 -25.78 15 14 H 0.05 2.53 7.52 -2.91 -0.02 2.51 15 15 C 0.02 1.10 5.46 84.65 0.46 1.56 15 16 N -0.92 -52.44 12.63 21.45 0.27 -52.17 15 17 Si 0.95 42.82 29.54 68.60 2.03 44.85 15 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 21 H 0.03 1.52 8.08 -2.39 -0.02 1.50 15 22 H 0.06 1.88 8.14 -2.39 -0.02 1.87 15 23 H 0.05 1.97 6.91 -2.39 -0.02 1.96 15 24 H 0.09 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.08 3.00 7.74 -2.39 -0.02 2.98 15 26 H 0.19 4.29 8.06 -2.91 -0.02 4.27 15 27 H 0.16 3.92 8.06 -2.91 -0.02 3.89 15 28 H 0.12 4.91 8.06 -2.91 -0.02 4.89 15 29 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -60.85 245.25 4.48 -56.37 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.13 Total: 10.22 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 2.95 Total: -37.73 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.62 Total: -73.70 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -60.85 4.48 -56.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928797.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.916 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds