Wall clock time and date at job start Thu Apr 9 2020 14:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48501 * 109.46848 * 270.00139 * 3 2 1 5 5 H 1.48503 * 109.47052 * 29.99608 * 3 2 1 6 6 H 1.48493 * 109.47167 * 149.99952 * 3 2 1 7 7 C 1.40160 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99666 * 179.97438 * 7 2 1 9 9 C 1.39435 * 120.00119 * 359.97438 * 7 2 1 10 10 O 1.35234 * 125.61584 * 0.17947 * 9 7 2 11 11 C 1.35101 * 110.07902 * 180.23237 * 10 9 7 12 12 C 1.38748 * 132.63166 * 179.76331 * 11 10 9 13 13 C 1.38086 * 119.93982 * 180.02562 * 12 11 10 14 14 C 1.38774 * 120.70129 * 0.02562 * 13 12 11 15 15 C 1.36627 * 120.43814 * 359.97364 * 14 13 12 16 16 C 1.40077 * 119.75652 * 0.02750 * 15 14 13 17 17 C 1.39744 * 125.61534 * 179.97438 * 9 7 2 18 18 O 1.35595 * 126.79476 * 0.04750 * 17 9 7 19 19 H 0.96993 * 120.00512 * 0.02562 * 1 2 3 20 20 H 1.08007 * 120.02988 * 359.97438 * 12 11 10 21 21 H 1.07998 * 119.64515 * 179.97438 * 13 12 11 22 22 H 1.08007 * 119.78150 * 179.97438 * 14 13 12 23 23 H 1.07994 * 120.11981 * 180.02562 * 15 14 13 24 24 H 0.96701 * 113.99684 * 269.68559 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4402 0.7000 7 6 2.0093 -1.2138 -0.0005 8 1 3.0893 -1.2138 -0.0010 9 6 1.3121 -2.4214 -0.0005 10 8 -0.0337 -2.5538 -0.0035 11 6 -0.3711 -3.8619 0.0026 12 6 -1.5943 -4.5169 0.0070 13 6 -1.6369 -5.8971 0.0136 14 6 -0.4662 -6.6421 0.0164 15 6 0.7502 -6.0200 0.0122 16 6 0.8154 -4.6207 0.0055 17 6 1.8891 -3.6942 -0.0016 18 8 3.2134 -3.9855 -0.0018 19 1 -0.4850 0.8399 -0.0004 20 1 -2.5122 -3.9477 0.0061 21 1 -2.5916 -6.4020 0.0175 22 1 -0.5169 -7.7210 0.0220 23 1 1.6581 -6.6048 0.0140 24 1 3.5964 -4.0741 -0.8853 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944354.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:44 Heat of formation + Delta-G solvation = -38.504988 kcal Electronic energy + Delta-G solvation = -12538.999418 eV Core-core repulsion = 10190.136860 eV Total energy + Delta-G solvation = -2348.862559 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74680 -36.64323 -35.82920 -33.93616 -30.55110 -29.20949 -28.89834 -25.29191 -21.72272 -21.13222 -19.97067 -17.94017 -16.96041 -15.64615 -15.39541 -14.98905 -14.25672 -14.14091 -13.18913 -12.94335 -12.61467 -12.30049 -11.72697 -11.59702 -11.26616 -11.14074 -11.04106 -10.65962 -10.08264 -9.75995 -8.94920 -8.66702 -7.59184 -7.21231 -7.09878 -4.68630 2.09667 2.51002 2.79580 2.87062 2.93538 3.54074 3.62980 4.38482 4.77804 4.87115 5.65075 5.75676 5.82409 6.12724 6.38642 6.56676 6.63588 6.66749 6.94316 7.09805 7.38170 7.55123 7.57613 7.58219 7.92379 8.11961 8.27607 8.82703 9.16415 9.74435 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.010602 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.716474 B = 2640.489848 C = 3148.819042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.061 3.939 3 Si 0.933 3.067 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.408 4.408 8 H 0.116 0.884 9 C 0.229 3.771 10 O -0.164 6.164 11 C -0.015 4.015 12 C -0.088 4.088 13 C -0.177 4.177 14 C -0.125 4.125 15 C -0.140 4.140 16 C -0.060 4.060 17 C -0.227 4.227 18 O -0.454 6.454 19 H 0.293 0.707 20 H 0.112 0.888 21 H 0.111 0.889 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -1.258 -1.414 1.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.164 4.164 3 Si 0.755 3.245 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.435 4.435 8 H 0.133 0.867 9 C 0.177 3.823 10 O -0.065 6.065 11 C -0.062 4.062 12 C -0.107 4.107 13 C -0.195 4.195 14 C -0.143 4.143 15 C -0.158 4.158 16 C -0.062 4.062 17 C -0.274 4.274 18 O -0.257 6.257 19 H 0.104 0.896 20 H 0.130 0.870 21 H 0.129 0.871 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.661 -0.902 -0.772 1.359 hybrid contribution 0.412 0.544 -0.564 0.885 sum -0.250 -0.358 -1.336 1.406 Atomic orbital electron populations 1.69781 1.07814 1.30855 1.28998 1.26396 0.95207 1.02722 0.92026 0.85874 0.80325 0.78477 0.79804 1.18716 1.19553 1.17785 1.19044 0.95398 0.87239 1.41844 0.86664 1.19719 0.78936 0.93901 0.89747 1.84698 1.22789 1.21819 1.77221 1.19508 0.94691 0.83231 1.08742 1.19678 0.93715 0.93510 1.03773 1.20360 0.97411 0.92359 1.09410 1.20375 0.92581 0.98329 1.03027 1.20017 0.96940 0.92323 1.06549 1.18937 0.93903 0.93711 0.99635 1.17744 0.82881 0.89448 1.37318 1.84885 1.19116 1.91958 1.29758 0.89622 0.86988 0.87065 0.87620 0.87668 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.85 11.96 55.56 0.66 -18.18 14 2 C 0.06 1.46 5.50 -17.25 -0.09 1.37 14 3 Si 0.93 17.27 29.56 -169.99 -5.03 12.25 14 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.25 -4.64 7.11 56.52 0.40 -4.24 14 7 C -0.41 -10.57 9.26 -38.41 -0.36 -10.93 14 8 H 0.12 2.80 7.85 -52.49 -0.41 2.39 14 9 C 0.23 6.36 6.77 -38.57 -0.26 6.10 14 10 O -0.16 -4.63 8.89 0.83 0.01 -4.62 14 11 C -0.02 -0.39 7.36 -38.41 -0.28 -0.67 14 12 C -0.09 -1.94 10.07 -39.45 -0.40 -2.34 14 13 C -0.18 -3.45 10.02 -39.44 -0.40 -3.85 14 14 C -0.12 -2.45 9.98 -39.97 -0.40 -2.85 14 15 C -0.14 -3.12 10.07 -39.47 -0.40 -3.52 14 16 C -0.06 -1.56 6.18 -106.85 -0.66 -2.22 14 17 C -0.23 -6.10 7.43 -37.65 -0.28 -6.38 14 18 O -0.45 -11.08 13.60 -18.48 -0.25 -11.34 14 19 H 0.29 6.48 8.30 -40.82 -0.34 6.14 14 20 H 0.11 2.22 8.06 -52.48 -0.42 1.79 14 21 H 0.11 1.77 8.06 -52.49 -0.42 1.35 14 22 H 0.11 1.70 8.06 -52.48 -0.42 1.28 14 23 H 0.11 2.16 8.06 -52.49 -0.42 1.74 14 24 H 0.33 6.58 9.06 45.56 0.41 6.99 14 LS Contribution 225.40 15.07 3.40 3.40 Total: -1.00 -29.58 225.40 -5.56 -35.14 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.82 Total: 8.65 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -3.52 Total: -25.29 kcal Atomic # 7 Polarization: -18.85 SS G_CDS: 0.66 Total: -18.18 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.24 Total: -15.96 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.58 -5.56 -35.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944354.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.368 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds